Quality Control And Differentiall Gene Expression Results

This Is A Report Of Quality Control And Differentail Gene Expression Analysis.

Differential Gene Expression Approach Used: DESeq2

Cutoffs To Establish Differentially Regulated Genes: |Log2FC| > 1 & padj < 0.05

PCA Plots

2D PCA on DESeq2’s Normalized Counts
Total Explained Variance = 81.085%
3D PCA on DESeq2’s Normalized Counts
Total Explained Variance = 88.267%
2D PCA on DESeq2’s Normalized Counts
Total Explained Variance = 90.092%
3D PCA on DESeq2’s Normalized Counts
Total Explained Variance = 95.176%

Dendrograms representing sample clustering

Dendrogram on DESeq2’s Normalized Counts

Dendrogram on DESeq2 normalized counts with only DEGs

Correlation between samples performed on Euclidean distance with the use of DE genes

Volcano Plots

Differentially Regulated Genes - Visualized Interactively

Table of DEGs

id hgnc baseMean log2FoldChange lfcSE stat pvalue padj
ENSG00000194717 MIR494 9.029829e-01 -1.525907 0.3518974 -4.336227 0.0000145 0.0000354
ENSG00000198972 MIRLET7E 5.373825e+01 1.194960 0.0735654 16.243514 0.0000000 0.0000000
ENSG00000198973 MIR375 6.398780e+00 -5.462437 0.2717062 -20.104204 0.0000000 0.0000000
ENSG00000198975 MIRLET7A2 5.414834e+02 -1.854599 0.1433441 -12.938093 0.0000000 0.0000000
ENSG00000198997 MIR107 2.967474e+01 -2.506765 0.0985783 -25.429165 0.0000000 0.0000000
ENSG00000199020 MIR381 1.038414e+00 -1.842003 0.3732992 -4.934388 0.0000008 0.0000021
ENSG00000199030 MIRLET7C 2.612328e+02 -1.360879 0.1047831 -12.987583 0.0000000 0.0000000
ENSG00000199036 MIR219A1 1.635521e+00 -1.942115 0.2155023 -9.012040 0.0000000 0.0000000
ENSG00000199038 MIR210 2.934819e+01 -2.288986 0.0927972 -24.666546 0.0000000 0.0000000
ENSG00000199043 MIR335 7.332574e+01 1.751152 0.1265935 13.832868 0.0000000 0.0000000
ENSG00000199053 MIR324 1.659498e+01 -1.593449 0.1054006 -15.118032 0.0000000 0.0000000
ENSG00000199059 MIR135B 1.735454e+00 1.104250 0.2283508 4.835761 0.0000013 0.0000034
ENSG00000199065 MIR101-2 4.980772e+01 -2.102459 0.1425077 -14.753302 0.0000000 0.0000000
ENSG00000199085 MIR148A 1.836641e+04 -2.728105 0.0566421 -48.163865 0.0000000 0.0000000
ENSG00000199127 MIR383 2.727457e+00 -2.280596 0.2086724 -10.929069 0.0000000 0.0000000
ENSG00000199132 MIR450A1 1.557265e+00 -1.612720 0.2290192 -7.041853 0.0000000 0.0000000
ENSG00000199133 MIRLET7D 1.742650e+01 -1.086392 0.1478693 -7.346976 0.0000000 0.0000000
ENSG00000199135 MIR101-1 1.164145e+01 -1.091295 0.1050052 -10.392763 0.0000000 0.0000000
ENSG00000199150 MIRLET7G 9.985931e+01 -2.040772 0.1416976 -14.402304 0.0000000 0.0000000
ENSG00000199165 MIRLET7A1 5.341140e+02 -1.948305 0.1441857 -13.512469 0.0000000 0.0000000
ENSG00000199168 MIR374A 2.120080e+00 -2.817486 0.3947619 -7.137179 0.0000000 0.0000000
ENSG00000199177 MIR31 3.079823e+00 2.154891 0.2359807 9.131641 0.0000000 0.0000000
ENSG00000199179 MIRLET7I 4.363649e+01 1.499814 0.0628197 23.874903 0.0000000 0.0000000
ENSG00000202566 MIR421 2.950301e+01 1.439925 0.1027400 14.015235 0.0000000 0.0000000
ENSG00000207548 MIR217 5.927426e-01 -1.887926 0.3950695 -4.778719 0.0000018 0.0000045
ENSG00000207550 MIR99B 2.836104e+01 1.642664 0.0772099 21.275294 0.0000000 0.0000000
ENSG00000207562 MIR34C 8.935021e+00 3.693911 0.1853385 19.930619 0.0000000 0.0000000
ENSG00000207563 MIR23B 6.720830e+03 -1.757477 0.1035523 -16.971884 0.0000000 0.0000000
ENSG00000207568 MIR203A 7.742975e+00 -5.563648 0.3527466 -15.772365 0.0000000 0.0000000
ENSG00000207571 MIR615 3.390781e-01 2.195292 0.5446990 4.030284 0.0000557 0.0001264
ENSG00000207581 MIR199B 9.326562e+02 2.723132 0.0737803 36.908652 0.0000000 0.0000000
ENSG00000207582 MIR30B 5.035915e+01 -1.094327 0.0881531 -12.413937 0.0000000 0.0000000
ENSG00000207585 MIR181D 1.432272e+02 2.248721 0.0688634 32.654785 0.0000000 0.0000000
ENSG00000207589 MIR508 2.098861e-01 1.362154 0.5359728 2.541460 0.0110390 0.0199520
ENSG00000207590 MIR215 1.623940e+00 3.110424 0.2617982 11.880999 0.0000000 0.0000000
ENSG00000207597 MIR490 6.315455e+00 -4.389557 0.2635384 -16.656234 0.0000000 0.0000000
ENSG00000207605 MIR191 5.868001e+03 -1.576165 0.1106381 -14.246137 0.0000000 0.0000000
ENSG00000207607 MIR200A 1.065219e+01 -3.678168 0.1822199 -20.185333 0.0000000 0.0000000
ENSG00000207611 MIR149 8.148629e+01 2.165420 0.0843078 25.684707 0.0000000 0.0000000
ENSG00000207615 MIR515-2 4.679061e+00 5.738152 0.2869688 19.995736 0.0000000 0.0000000
ENSG00000207616 MIR515-1 4.679061e+00 5.738152 0.2869688 19.995736 0.0000000 0.0000000
ENSG00000207617 MIR3074 9.094640e+00 -1.011420 0.1074888 -9.409540 0.0000000 0.0000000
ENSG00000207619 MIR585 1.118633e+00 3.325241 0.3053415 10.890235 0.0000000 0.0000000
ENSG00000207620 MIR516A2 7.411675e-01 3.133780 0.3741599 8.375509 0.0000000 0.0000000
ENSG00000207624 MIR194-1 2.868974e+01 -1.304135 0.1138054 -11.459346 0.0000000 0.0000000
ENSG00000207625 MIR128-2 6.417321e-01 1.053255 0.2943843 3.577824 0.0003465 0.0007416
ENSG00000207630 MIR7-3 1.728629e+01 1.187147 0.1448955 8.193120 0.0000000 0.0000000
ENSG00000207633 MIR505 4.754409e+01 -1.662417 0.0805587 -20.636095 0.0000000 0.0000000
ENSG00000207638 MIR99A 8.887816e+01 -1.759889 0.1545615 -11.386329 0.0000000 0.0000000
ENSG00000207649 MIR138-2 1.731769e+00 -2.400981 0.2929376 -8.196218 0.0000000 0.0000000
ENSG00000207656 MIR489 2.929505e-01 1.741569 0.4882937 3.566643 0.0003616 0.0007705
ENSG00000207691 MIR183 1.358448e+01 1.685072 0.1622913 10.383009 0.0000000 0.0000000
ENSG00000207696 MIR659 3.056259e-01 -1.037619 0.3912898 -2.651793 0.0080066 0.0147442
ENSG00000207703 MIR7-2 1.750451e+01 1.207719 0.1443605 8.365994 0.0000000 0.0000000
ENSG00000207708 MIR141 6.209106e-01 -1.184214 0.3233980 -3.661784 0.0002505 0.0005408
ENSG00000207713 MIR200C 3.635743e+00 -1.953724 0.2324637 -8.404430 0.0000000 0.0000000
ENSG00000207717 MIR551B 2.118366e-01 1.398525 0.5808491 2.407725 0.0160523 0.0283822
ENSG00000207721 MIR186 4.138329e+02 -1.497118 0.1121635 -13.347638 0.0000000 0.0000000
ENSG00000207725 MIR222 2.530688e+03 4.177559 0.1046481 39.920071 0.0000000 0.0000000
ENSG00000207726 MIR455 2.221397e+01 -4.164840 0.1300151 -32.033507 0.0000000 0.0000000
ENSG00000207730 MIR200B 4.253994e+02 -2.345275 0.1136660 -20.633041 0.0000000 0.0000000
ENSG00000207732 MIR218-1 1.048096e+01 2.567631 0.1484730 17.293593 0.0000000 0.0000000
ENSG00000207739 MIR218-2 9.494956e+00 2.562911 0.1585912 16.160489 0.0000000 0.0000000
ENSG00000207743 MIR495 4.367160e-01 -1.336087 0.4083574 -3.271858 0.0010684 0.0021457
ENSG00000207744 MIR10B 5.689926e+03 4.339228 0.1188101 36.522392 0.0000000 0.0000000
ENSG00000207751 4.365225e-01 -1.360865 0.2909392 -4.677491 0.0000029 0.0000074
ENSG00000207755 MIR450A2 1.467968e+00 -1.511837 0.2337695 -6.467214 0.0000000 0.0000000
ENSG00000207767 MIR516A1 7.411675e-01 3.133780 0.3741599 8.375509 0.0000000 0.0000000
ENSG00000207778 MIR3591 3.150181e+03 -10.275138 0.2460942 -41.752863 0.0000000 0.0000000
ENSG00000207781 MIR625 7.616673e-01 1.098387 0.3993460 2.750464 0.0059511 0.0111697
ENSG00000207782 MIR150 6.718673e+00 1.317307 0.1212861 10.861157 0.0000000 0.0000000
ENSG00000207784 MIR542 3.178374e+00 -1.424942 0.1742424 -8.177930 0.0000000 0.0000000
ENSG00000207797 MIR187 1.741731e+00 -2.604199 0.2277856 -11.432675 0.0000000 0.0000000
ENSG00000207798 MIR216A 3.522001e-01 -1.236980 0.4825721 -2.563306 0.0103681 0.0188791
ENSG00000207799 MIR520G 2.983678e-01 1.842099 0.5462379 3.372338 0.0007453 0.0015477
ENSG00000207800 MIR504 6.075329e+00 2.984831 0.1707275 17.483014 0.0000000 0.0000000
ENSG00000207805 MIR483 9.848860e+00 -3.577553 0.1534164 -23.319227 0.0000000 0.0000000
ENSG00000207808 MIR27A 2.855053e+00 1.501096 0.2060002 7.286868 0.0000000 0.0000000
ENSG00000207811 MIR34B 1.375811e+00 3.360526 0.2604339 12.903566 0.0000000 0.0000000
ENSG00000207870 MIR221 2.400779e+02 1.863293 0.0730348 25.512392 0.0000000 0.0000000
ENSG00000207924 MIR196A2 2.465694e+00 4.073588 0.4314517 9.441584 0.0000000 0.0000000
ENSG00000207925 MIR516B2 4.324355e-01 2.380951 0.5145120 4.627591 0.0000037 0.0000093
ENSG00000207933 MIR9-1 2.566341e+00 -2.554728 0.3167592 -8.065203 0.0000000 0.0000000
ENSG00000207935 MIR204 2.592594e+02 2.608473 0.1831065 14.245659 0.0000000 0.0000000
ENSG00000207942 MIR136 1.514806e+00 -1.450374 0.2880199 -5.035672 0.0000005 0.0000012
ENSG00000207946 MIR516B1 3.850437e+00 5.590054 0.2658970 21.023384 0.0000000 0.0000000
ENSG00000207948 MIR328 3.123698e+00 2.368417 0.1659406 14.272685 0.0000000 0.0000000
ENSG00000207954 MIR138-1 2.145584e+00 -2.472490 0.2730203 -9.056067 0.0000000 0.0000000
ENSG00000207978 MIR154 5.800227e-01 1.523292 0.3000060 5.077538 0.0000004 0.0000010
ENSG00000207980 MIR23A 6.432416e+01 1.532853 0.0616285 24.872495 0.0000000 0.0000000
ENSG00000207988 MIR576 2.953744e+00 -2.433558 0.2368458 -10.274862 0.0000000 0.0000000
ENSG00000207990 MIR182 1.343169e+03 2.572776 0.1501800 17.131278 0.0000000 0.0000000
ENSG00000207994 MIR100 2.002330e+02 -2.656549 0.2311588 -11.492311 0.0000000 0.0000000
ENSG00000208000 MIR509-1 1.301818e+00 2.385440 0.2969577 8.032928 0.0000000 0.0000000
ENSG00000208005 MIR503 5.620056e-01 -1.090239 0.2971579 -3.668889 0.0002436 0.0005307
ENSG00000208008 MIR125A 6.786775e+03 1.496637 0.0670454 22.322747 0.0000000 0.0000000
ENSG00000208009 MIR130A 5.332753e+01 -2.219515 0.2203982 -10.070476 0.0000000 0.0000000
ENSG00000208012 MIRLET7F2 2.279075e+02 -1.432540 0.1574225 -9.099967 0.0000000 0.0000000
ENSG00000208013 MIR652 5.623671e+00 1.590872 0.1490311 10.674767 0.0000000 0.0000000
ENSG00000208015 MIR362 6.756657e+01 -1.443603 0.1052963 -13.709908 0.0000000 0.0000000
ENSG00000208022 MIR618 1.138412e+00 -3.283082 0.5742814 -5.716853 0.0000000 0.0000000
ENSG00000208023 MIR185 2.183361e+00 -1.272242 0.1704217 -7.465258 0.0000000 0.0000000
ENSG00000211137 MIR190A 1.427590e+02 2.725394 0.1064346 25.606278 0.0000000 0.0000000
ENSG00000211543 MIR320B1 3.219530e+00 2.124572 0.2004760 10.597639 0.0000000 0.0000000
ENSG00000211563 MIR3065 1.513361e+01 -1.694874 0.1253704 -13.518938 0.0000000 0.0000000
ENSG00000211575 MIR760 4.337561e-01 1.257804 0.4043843 3.110417 0.0018682 0.0036468
ENSG00000211590 MIR802 4.025638e-01 -1.980985 0.6035554 -3.282192 0.0010300 0.0020771
ENSG00000211591 MIR762 2.940148e-01 1.320278 0.4114924 3.208513 0.0013342 0.0026361
ENSG00000211997 MIR708 6.786051e+01 4.901591 0.1219643 40.188725 0.0000000 0.0000000
ENSG00000212013 MIR509-2 1.301818e+00 2.385440 0.2969577 8.032928 0.0000000 0.0000000
ENSG00000212014 MIR509-3 1.276839e+00 2.350386 0.3000152 7.834225 0.0000000 0.0000000
ENSG00000212027 MIR374B 4.681758e+00 -1.448862 0.2578643 -5.618699 0.0000000 0.0000001
ENSG00000212102 MIR301B 3.139726e+00 -3.247116 0.3737653 -8.687580 0.0000000 0.0000000
ENSG00000216001 MIR450B 1.895840e+00 -1.758062 0.3304106 -5.320841 0.0000001 0.0000003
ENSG00000216077 MIR887 1.114436e+02 2.059025 0.0981820 20.971508 0.0000000 0.0000000
ENSG00000216101 MIR877 7.009417e+00 1.066553 0.1526929 6.984956 0.0000000 0.0000000
ENSG00000216135 MIR885 5.436763e+00 -5.416197 0.2351976 -23.028282 0.0000000 0.0000000
ENSG00000216141 MIR941-2 3.702866e+02 -1.340771 0.1107095 -12.110712 0.0000000 0.0000000
ENSG00000216195 MIR941-4 3.702925e+02 -1.340803 0.1107049 -12.111501 0.0000000 0.0000000
ENSG00000221052 MIR1266 9.850241e-01 1.024210 0.2496918 4.101896 0.0000410 0.0000939
ENSG00000221063 MIR1296 2.816056e+00 -1.774623 0.2219062 -7.997175 0.0000000 0.0000000
ENSG00000221184 2.372507e+00 1.381673 0.2043938 6.759856 0.0000000 0.0000000
ENSG00000221365 MIR1228 3.571178e-01 1.413556 0.4083879 3.461307 0.0005376 0.0011307
ENSG00000221390 MIR1295A 1.770446e+00 -3.807920 0.2556403 -14.895618 0.0000000 0.0000000
ENSG00000221406 MIR320B2 3.621795e+00 1.997846 0.1829711 10.918917 0.0000000 0.0000000
ENSG00000221464 MIR1271 2.560774e+00 1.044554 0.1939098 5.386803 0.0000001 0.0000002
ENSG00000221552 MIR1303 4.796579e-01 -1.467021 0.3438251 -4.266764 0.0000198 0.0000477
ENSG00000221585 MIR1226 4.218071e-01 1.471891 0.4002646 3.677294 0.0002357 0.0005158
ENSG00000221656 MIR1225 2.733585e-01 1.299491 0.4888926 2.658030 0.0078599 0.0145289
ENSG00000221760 MIR548J 1.082542e+00 -1.076940 0.2594379 -4.151050 0.0000331 0.0000762
ENSG00000223109 MIR1538 3.837849e-01 1.008906 0.3785277 2.665342 0.0076910 0.0142708
ENSG00000238517 MIR1270 1.422468e+00 1.325456 0.2252398 5.884646 0.0000000 0.0000000
ENSG00000263453 6.247681e+00 2.543829 0.2618354 9.715373 0.0000000 0.0000000
ENSG00000263572 MIR7853 2.117589e+02 6.883324 0.2022815 34.028447 0.0000000 0.0000000
ENSG00000264063 2.766992e+00 -1.109419 0.2808213 -3.950621 0.0000779 0.0001761
ENSG00000264073 MIR3199-1 8.503388e-01 1.469081 0.2946063 4.986591 0.0000006 0.0000016
ENSG00000264141 MIR3928 1.043631e+00 1.076127 0.2460898 4.372906 0.0000123 0.0000301
ENSG00000264268 MIR4767 1.068336e+00 1.699478 0.2786946 6.097993 0.0000000 0.0000000
ENSG00000264357 MIR4648 2.581095e-01 1.373623 0.5535223 2.481604 0.0130793 0.0233798
ENSG00000264462 MIR3648-2 8.422949e+00 -2.052017 0.2484163 -8.260397 0.0000000 0.0000000
ENSG00000264574 2.371225e+00 1.383679 0.2058500 6.721783 0.0000000 0.0000000
ENSG00000264607 MIR3173 2.788711e-01 1.105317 0.4464390 2.475852 0.0132919 0.0236731
ENSG00000264614 MIR5588 4.058454e-01 -1.742423 0.3213302 -5.422530 0.0000001 0.0000002
ENSG00000264661 MIR3200 1.060554e+00 1.112204 0.2360734 4.711264 0.0000025 0.0000063
ENSG00000264725 MIR3129 4.470315e-01 1.288910 0.3878157 3.323511 0.0008889 0.0018227
ENSG00000264737 MIR4511 4.028951e-01 1.065196 0.4061855 2.622438 0.0087303 0.0160165
ENSG00000264803 MIR378C 3.873557e-01 1.000175 0.3549239 2.817998 0.0048324 0.0091760
ENSG00000265134 MIR3190 3.911146e-01 1.101510 0.3902433 2.822624 0.0047632 0.0090799
ENSG00000265154 MIR151B 1.943832e+00 1.001527 0.2375231 4.216547 0.0000248 0.0000582
ENSG00000265201 MIR4677 5.467168e-01 -1.370734 0.3242192 -4.227799 0.0000236 0.0000559
ENSG00000265258 MIR4686 3.157961e+00 -4.668318 0.2444595 -19.096488 0.0000000 0.0000000
ENSG00000265395 MIR3944 5.613558e-01 -1.466703 0.3477495 -4.217700 0.0000247 0.0000582
ENSG00000265538 MIR4421 7.469158e-01 2.446205 0.3041283 8.043330 0.0000000 0.0000000
ENSG00000265867 MIR4516 6.977726e-01 2.125139 0.3829222 5.549793 0.0000000 0.0000001
ENSG00000265871 MIR3174 6.711768e-01 -1.153222 0.3291896 -3.503217 0.0004597 0.0009753
ENSG00000265976 MIR4725 7.224390e-01 2.703413 0.2851319 9.481274 0.0000000 0.0000000
ENSG00000266104 MIR4326 7.807566e+00 1.384016 0.2047804 6.758539 0.0000000 0.0000000
ENSG00000266204 MIR5589 7.528995e+00 -5.942067 0.2403550 -24.722040 0.0000000 0.0000000
ENSG00000266276 MIR4743 2.469513e-01 1.492999 0.6684484 2.233529 0.0255141 0.0438411
ENSG00000266383 MIR5002 7.867324e-01 1.997937 0.3107830 6.428722 0.0000000 0.0000000
ENSG00000266509 MIR3934 4.286337e-01 1.528842 0.3934218 3.886014 0.0001019 0.0002271
ENSG00000266533 MIR3619 2.280430e-01 1.243970 0.4951804 2.512155 0.0119996 0.0216082
ENSG00000266618 MIR4742 6.552202e-01 1.104802 0.3179362 3.474915 0.0005110 0.0010795
ENSG00000266665 MIR4739 3.521466e-01 -1.381234 0.5767507 -2.394854 0.0166270 0.0292923
ENSG00000272036 MIR139 3.194065e+01 -1.290017 0.1667085 -7.738160 0.0000000 0.0000000
ENSG00000272543 MIR4787 1.181972e+00 1.553841 0.2450093 6.341968 0.0000000 0.0000000
ENSG00000198986 NA 5.341622e+02 -1.817607 0.1424054 -12.763609 0.0000000 0.0000000
ENSG00000199066 NA 2.193820e+01 1.054048 0.0696376 15.136183 0.0000000 0.0000000
ENSG00000199187 NA 1.807447e+01 1.098387 0.1405014 7.817627 0.0000000 0.0000000
ENSG00000207584 NA 4.679666e+00 3.920449 0.2639834 14.851120 0.0000000 0.0000000
ENSG00000207602 NA 3.011050e+02 -1.436458 0.0632087 -22.725632 0.0000000 0.0000000
ENSG00000207603 NA 1.734336e+01 1.177277 0.1429539 8.235365 0.0000000 0.0000000
ENSG00000207621 NA 2.249897e+03 3.956266 0.1219464 32.442675 0.0000000 0.0000000
ENSG00000207648 NA 9.308555e+03 -7.533286 0.1180982 -63.788310 0.0000000 0.0000000
ENSG00000207709 NA 1.652830e+01 1.036682 0.0919660 11.272450 0.0000000 0.0000000
ENSG00000207710 NA 1.107868e+01 1.386380 0.1249901 11.091915 0.0000000 0.0000000
ENSG00000207753 NA 2.404487e+02 4.874544 0.1165014 41.841082 0.0000000 0.0000000
ENSG00000207812 NA 2.241959e+01 -4.186199 0.2511885 -16.665565 0.0000000 0.0000000
ENSG00000207819 NA 2.562719e+00 -2.552506 0.3167797 -8.057668 0.0000000 0.0000000
ENSG00000207865 NA 6.701266e+01 -1.509276 0.1078266 -13.997254 0.0000000 0.0000000
ENSG00000207939 NA 7.809775e+01 1.520201 0.1167350 13.022666 0.0000000 0.0000000
ENSG00000207949 NA 3.871255e+01 -1.121135 0.0798219 -14.045452 0.0000000 0.0000000
ENSG00000208035 NA 3.522832e+02 2.438231 0.0659548 36.968208 0.0000000 0.0000000
ENSG00000221035 NA 1.504472e+02 2.837207 0.1416232 20.033492 0.0000000 0.0000000
ENSG00000221147 NA 1.422468e+00 1.325456 0.2252398 5.884646 0.0000000 0.0000000
ENSG00000221802 NA 7.639676e-01 1.082199 0.2525954 4.284320 0.0000183 0.0000443
ENSG00000239594 NA 2.525140e-01 1.220130 0.5017702 2.431650 0.0150302 0.0266718
ENSG00000251725 NA 1.022808e+01 1.349647 0.1123944 12.008130 0.0000000 0.0000000
ENSG00000252584 NA 1.926021e+00 -1.341367 0.2420107 -5.542595 0.0000000 0.0000001
ENSG00000264048 NA 6.949188e+00 3.565449 0.2162364 16.488663 0.0000000 0.0000000
ENSG00000264077 NA 5.170515e-01 -1.564486 0.3371722 -4.640022 0.0000035 0.0000088
ENSG00000264147 NA 4.389933e-01 1.679614 0.4150203 4.047064 0.0000519 0.0001183
ENSG00000264919 NA 1.277195e+00 3.013791 0.2442762 12.337639 0.0000000 0.0000000
ENSG00000265438 NA 1.358781e+00 -2.763945 0.2713795 -10.184795 0.0000000 0.0000000
ENSG00000265573 NA 1.378932e+00 3.315719 0.2736621 12.116106 0.0000000 0.0000000
ENSG00000265611 NA 8.945369e-01 1.013629 0.2828143 3.584078 0.0003383 0.0007272
ENSG00000265710 NA 3.332841e+01 3.134015 0.1762896 17.777651 0.0000000 0.0000000
ENSG00000265764 NA 1.298381e+00 1.034714 0.2654753 3.897591 0.0000972 0.0002175
ENSG00000265767 NA 6.601831e-01 1.702085 0.3740886 4.549953 0.0000054 0.0000134
ENSG00000265979 NA 4.193165e-01 1.396537 0.6382979 2.187908 0.0286763 0.0487597
ENSG00000266398 NA 1.206370e+00 3.058002 0.3049681 10.027284 0.0000000 0.0000000
ENSG00000266636 NA 3.650095e-01 1.761335 0.4809190 3.662436 0.0002498 0.0005408
ENSG00000271748 NA 5.565536e+01 2.453375 0.1065223 23.031572 0.0000000 0.0000000

Number of DEGs: 203

TO FUNCTIONAL HERE

library(miRBaseConverter)

# Fulfill the aim of the study
dge_hgnc <-
  biomaRt::getBM(
    attributes = c('ensembl_gene_id', 'external_gene_name'
                   # can be commented out to not induce multiple IDs
                   , 'mirbase_accession', 'mirbase_id'
                   ),
    filters = 'ensembl_gene_id',
    values =  dge$id,
    mart = biomaRt::useDataset(
      "hsapiens_gene_ensembl",
      mart = biomaRt::useMart("ensembl", host = "ensembl.org")
    )
  ) %>%
  dplyr::rename('id' = 'ensembl_gene_id',
                'hgnc' = 'external_gene_name') %>%
  full_join(dge)

knitr::kable(dge_hgnc, format="markdown")
id hgnc mirbase_accession mirbase_id baseMean log2FoldChange lfcSE stat pvalue padj
ENSG00000194717 MIR494 MI0003134 hsa-mir-494 9.029829e-01 -1.5259071 0.3518974 -4.3362271 0.0000145 0.0000354
ENSG00000198972 MIRLET7E MI0000066 hsa-let-7e 5.373825e+01 1.1949604 0.0735654 16.2435139 0.0000000 0.0000000
ENSG00000198973 MIR375 MI0000783 hsa-mir-375 6.398780e+00 -5.4624367 0.2717062 -20.1042040 0.0000000 0.0000000
ENSG00000198974 MIR30E MI0000749 hsa-mir-30e 3.902451e+04 -0.7845145 0.0885598 -8.8585817 0.0000000 0.0000000
ENSG00000198975 MIRLET7A2 MI0000061 hsa-let-7a-2 5.414834e+02 -1.8545989 0.1433441 -12.9380929 0.0000000 0.0000000
ENSG00000198976 MIR429 MI0001641 hsa-mir-429 6.258010e-02 -0.1125922 0.8278778 -0.1360010 0.8918205 NA
ENSG00000198984 MIR345 MI0000825 hsa-mir-345 1.248062e+00 -0.1529020 0.2044427 -0.7478967 0.4545225 0.5826483
ENSG00000198987 MIR16-2 MI0000115 hsa-mir-16-2 8.283027e+01 -0.5720228 0.0920648 -6.2132622 0.0000000 0.0000000
ENSG00000198995 MIR340 MI0000802 hsa-mir-340 2.241044e+01 -0.6912193 0.0887657 -7.7870089 0.0000000 0.0000000
ENSG00000198997 MIR107 MI0000114 hsa-mir-107 2.967474e+01 -2.5067649 0.0985783 -25.4291651 0.0000000 0.0000000
ENSG00000199005 MIR370 MI0000778 hsa-mir-370 1.533883e+00 0.8037180 0.2091078 3.8435578 0.0001213 0.0002690
ENSG00000199012 MIR412 MI0002464 hsa-mir-412 3.937430e-02 -0.1070618 1.2150696 -0.0881116 0.9297879 NA
ENSG00000199015 MIR377 MI0000785 hsa-mir-377 6.609877e-01 -0.0174710 0.2705755 -0.0645699 0.9485164 0.9603237
ENSG00000199020 MIR381 MI0000789 hsa-mir-381 1.038414e+00 -1.8420033 0.3732992 -4.9343885 0.0000008 0.0000021
ENSG00000199023 MIR339 MI0000815 hsa-mir-339 4.993165e+01 -0.3754946 0.0982423 -3.8221283 0.0001323 0.0002921
ENSG00000199024 MIR103A2 MI0000108 hsa-mir-103a-2 9.675843e+02 -0.8730459 0.0698645 -12.4962659 0.0000000 0.0000000
ENSG00000199025 MIR369 MI0000777 hsa-mir-369 7.850200e-01 0.0720598 0.2484479 0.2900400 0.7717856 0.8513365
ENSG00000199030 MIRLET7C MI0000064 hsa-let-7c 2.612328e+02 -1.3608786 0.1047831 -12.9875826 0.0000000 0.0000000
ENSG00000199031 MIR371A MI0000779 hsa-mir-371a 9.268650e-02 0.4192221 1.0577067 0.3963500 0.6918468 0.8038601
ENSG00000199032 MIR425 MI0001448 hsa-mir-425 4.092463e+02 -0.4648148 0.0760995 -6.1079861 0.0000000 0.0000000
ENSG00000199035 MIR103A1 MI0000109 hsa-mir-103a-1 9.646655e+02 -0.8734357 0.0697858 -12.5159575 0.0000000 0.0000000
ENSG00000199036 MIR219A1 MI0000296 hsa-mir-219a-1 1.635521e+00 -1.9421153 0.2155023 -9.0120402 0.0000000 0.0000000
ENSG00000199038 MIR210 MI0000286 hsa-mir-210 2.934819e+01 -2.2889861 0.0927972 -24.6665458 0.0000000 0.0000000
ENSG00000199043 MIR335 MI0000816 hsa-mir-335 7.332574e+01 1.7511518 0.1265935 13.8328682 0.0000000 0.0000000
ENSG00000199047 MIR378A MI0000786 hsa-mir-378a 5.939008e+01 -0.8321747 0.0685902 -12.1325591 0.0000000 0.0000000
ENSG00000199051 MIR361 MI0000760 hsa-mir-361 1.418794e+02 0.0860733 0.0440252 1.9550898 0.0505725 0.0839434
ENSG00000199053 MIR324 MI0000813 hsa-mir-324 1.659498e+01 -1.5934493 0.1054006 -15.1180318 0.0000000 0.0000000
ENSG00000199059 MIR135B MI0000810 hsa-mir-135b 1.735454e+00 1.1042500 0.2283508 4.8357609 0.0000013 0.0000034
ENSG00000199065 MIR101-2 MI0000739 hsa-mir-101-2 4.980772e+01 -2.1024592 0.1425077 -14.7533024 0.0000000 0.0000000
ENSG00000199069 MIR323A MI0000807 hsa-mir-323a 7.442760e-02 0.5643524 0.9704442 0.5815404 0.5608763 NA
ENSG00000199072 MIRLET7F1 MI0000067 hsa-let-7f-1 8.591698e+01 0.2678826 0.0834153 3.2114309 0.0013208 0.0026200
ENSG00000199075 MIR26A1 MI0000083 hsa-mir-26a-1 8.331967e+02 -0.4694277 0.0838323 -5.5996077 0.0000000 0.0000001
ENSG00000199082 MIR342 MI0000805 hsa-mir-342 6.508519e+02 -0.5349392 0.0687900 -7.7764106 0.0000000 0.0000000
ENSG00000199085 MIR148A MI0000253 hsa-mir-148a 1.836641e+04 -2.7281047 0.0566421 -48.1638653 0.0000000 0.0000000
ENSG00000199090 MIR326 MI0000808 hsa-mir-326 3.999001e-01 0.5504576 0.3743923 1.4702695 0.1414888 0.2105077
ENSG00000199092 MIR410 MI0002465 hsa-mir-410 4.711937e-01 -0.1934863 0.3417208 -0.5662116 0.5712499 0.6934576
ENSG00000199094 MIR30C2 MI0000254 hsa-mir-30c-2 1.691446e+04 0.1584652 0.0847602 1.8695697 0.0615436 0.0990742
ENSG00000199095 MIR372 MI0000780 hsa-mir-372 1.908655e-01 -0.3274847 0.4796209 -0.6827991 0.4947338 0.6238504
ENSG00000199104 MIR346 MI0000826 hsa-mir-346 7.389278e-01 -0.7372068 0.3297736 -2.2354934 0.0253850 0.0437734
ENSG00000199107 MIR409 MI0001735 hsa-mir-409 5.909775e+01 0.2305035 0.0859769 2.6809932 0.0073404 0.0136722
ENSG00000199109 MIR411 MI0003675 hsa-mir-411 7.943130e-01 0.6297968 0.2655664 2.3715228 0.0177150 0.0309853
ENSG00000199121 MIR26B MI0000084 hsa-mir-26b 7.825431e+01 -0.9932502 0.0664976 -14.9366433 0.0000000 0.0000000
ENSG00000199122 MIR148B MI0000811 hsa-mir-148b 2.766842e+02 -0.6009285 0.0520106 -11.5539534 0.0000000 0.0000000
ENSG00000199127 MIR383 MI0000791 hsa-mir-383 2.727457e+00 -2.2805956 0.2086724 -10.9290689 0.0000000 0.0000000
ENSG00000199130 MIR365A MI0000767 hsa-mir-365a 1.205032e+01 -0.3834382 0.1346658 -2.8473324 0.0044087 0.0084371
ENSG00000199132 MIR450A1 MI0001652 hsa-mir-450a-1 1.557265e+00 -1.6127196 0.2290192 -7.0418527 0.0000000 0.0000000
ENSG00000199133 MIRLET7D MI0000065 hsa-let-7d 1.742650e+01 -1.0863921 0.1478693 -7.3469761 0.0000000 0.0000000
ENSG00000199135 MIR101-1 MI0000103 hsa-mir-101-1 1.164145e+01 -1.0912947 0.1050052 -10.3927635 0.0000000 0.0000000
ENSG00000199143 MIR373 MI0000781 hsa-mir-373 5.795920e-01 -0.0316698 0.3435712 -0.0921784 0.9265563 0.9499149
ENSG00000199150 MIRLET7G MI0000433 hsa-let-7g 9.985931e+01 -2.0407724 0.1416976 -14.4023037 0.0000000 0.0000000
ENSG00000199151 MIR337 MI0000806 hsa-mir-337 1.070916e-01 0.2337550 0.8928670 0.2618028 0.7934735 0.8623944
ENSG00000199153 MIR30D MI0000255 hsa-mir-30d 2.518498e+04 -0.3573679 0.0789831 -4.5246099 0.0000061 0.0000151
ENSG00000199158 MIR96 MI0000098 hsa-mir-96 2.173366e-01 -1.1169041 0.6820402 -1.6375928 0.1015067 0.1552829
ENSG00000199161 MIR126 MI0000471 hsa-mir-126 4.406282e+01 -0.1532051 0.1224787 -1.2508714 0.2109814 0.3028204
ENSG00000199165 MIRLET7A1 MI0000060 hsa-let-7a-1 5.341140e+02 -1.9483052 0.1441857 -13.5124689 0.0000000 0.0000000
ENSG00000199168 MIR374A MI0000782 hsa-mir-374a 2.120080e+00 -2.8174864 0.3947619 -7.1371792 0.0000000 0.0000000
ENSG00000199172 MIR331 MI0000812 hsa-mir-331 2.238225e+00 0.0212011 0.1628767 0.1301668 0.8964344 0.9327505
ENSG00000199177 MIR31 MI0000089 hsa-mir-31 3.079823e+00 2.1548907 0.2359807 9.1316407 0.0000000 0.0000000
ENSG00000199179 MIRLET7I MI0000434 hsa-let-7i 4.363649e+01 1.4998139 0.0628197 23.8749028 0.0000000 0.0000000
ENSG00000202560 MIR539 MI0003514 hsa-mir-539 8.509663e-01 0.0407908 0.2493058 0.1636174 0.8700323 0.9130662
ENSG00000202566 MIR421 MI0003685 hsa-mir-421 2.950301e+01 1.4399248 0.1027400 14.0152354 0.0000000 0.0000000
ENSG00000202569 MIR146B MI0003129 hsa-mir-146b 1.049940e+04 -0.6493184 0.1556796 -4.1708630 0.0000303 0.0000705
ENSG00000202601 MIR582 MI0003589 hsa-mir-582 1.020648e+01 -0.8701639 0.1346360 -6.4630834 0.0000000 0.0000000
ENSG00000202609 MIR488 MI0003123 hsa-mir-488 9.767190e-02 0.3337741 0.8129818 0.4105555 0.6813985 0.7992807
ENSG00000207547 MIR25 MI0000082 hsa-mir-25 1.124630e+01 -0.1750237 0.0970601 -1.8032518 0.0713487 0.1134142
ENSG00000207548 MIR217 MI0000293 hsa-mir-217 5.927426e-01 -1.8879260 0.3950695 -4.7787192 0.0000018 0.0000045
ENSG00000207550 MIR99B MI0000746 hsa-mir-99b 2.836104e+01 1.6426643 0.0772099 21.2752937 0.0000000 0.0000000
ENSG00000207562 MIR34C MI0000743 hsa-mir-34c 8.935021e+00 3.6939112 0.1853385 19.9306188 0.0000000 0.0000000
ENSG00000207563 MIR23B MI0000439 hsa-mir-23b 6.720830e+03 -1.7574774 0.1035523 -16.9718839 0.0000000 0.0000000
ENSG00000207568 MIR203A MI0000283 hsa-mir-203a 7.742975e+00 -5.5636478 0.3527466 -15.7723651 0.0000000 0.0000000
ENSG00000207569 MIR433 MI0001723 hsa-mir-433 7.332238e-01 0.3383103 0.2588513 1.3069677 0.1912237 0.2777296
ENSG00000207571 MIR615 MI0003628 hsa-mir-615 3.390781e-01 2.1952916 0.5446990 4.0302839 0.0000557 0.0001264
ENSG00000207573 MIR550A2 MI0003601 hsa-mir-550a-2 2.220755e+00 0.2601136 0.1864451 1.3951215 0.1629792 0.2388404
ENSG00000207573 MIR550A2 MI0016687 hsa-mir-550b-2 2.220755e+00 0.2601136 0.1864451 1.3951215 0.1629792 0.2388404
ENSG00000207581 MIR199B MI0000282 hsa-mir-199b 9.326562e+02 2.7231322 0.0737803 36.9086521 0.0000000 0.0000000
ENSG00000207582 MIR30B MI0000441 hsa-mir-30b 5.035915e+01 -1.0943273 0.0881531 -12.4139370 0.0000000 0.0000000
ENSG00000207585 MIR181D MI0003139 hsa-mir-181d 1.432272e+02 2.2487205 0.0688634 32.6547851 0.0000000 0.0000000
ENSG00000207586 MIR135A2 MI0000453 hsa-mir-135a-2 1.997773e-01 -0.7450973 0.7006661 -1.0634128 0.2875948 0.3918842
ENSG00000207589 MIR508 MI0003195 hsa-mir-508 2.098861e-01 1.3621537 0.5359728 2.5414605 0.0110390 0.0199520
ENSG00000207590 MIR215 MI0000291 hsa-mir-215 1.623940e+00 3.1104238 0.2617982 11.8809993 0.0000000 0.0000000
ENSG00000207595 MIR181A2 MI0000269 hsa-mir-181a-2 3.453778e+03 -0.3293327 0.1012691 -3.2520565 0.0011457 0.0022915
ENSG00000207597 MIR490 MI0003125 hsa-mir-490 6.315455e+00 -4.3895567 0.2635384 -16.6562341 0.0000000 0.0000000
ENSG00000207600 MIR598 MI0003610 hsa-mir-598 2.292802e+00 0.3532471 0.2078129 1.6998323 0.0891625 0.1385710
ENSG00000207605 MIR191 MI0000465 hsa-mir-191 5.868001e+03 -1.5761651 0.1106381 -14.2461371 0.0000000 0.0000000
ENSG00000207607 MIR200A MI0000737 hsa-mir-200a 1.065219e+01 -3.6781685 0.1822199 -20.1853331 0.0000000 0.0000000
ENSG00000207608 MIR127 MI0000472 hsa-mir-127 7.990732e+01 0.7637838 0.0819577 9.3192389 0.0000000 0.0000000
ENSG00000207609 MIR491 MI0003126 hsa-mir-491 2.367152e+00 0.8564288 0.2014465 4.2513951 0.0000212 0.0000506
ENSG00000207611 MIR149 MI0000478 hsa-mir-149 8.148629e+01 2.1654199 0.0843078 25.6847072 0.0000000 0.0000000
ENSG00000207613 MIR181C MI0000271 hsa-mir-181c 7.744487e+01 0.7302786 0.1075508 6.7900809 0.0000000 0.0000000
ENSG00000207614 MIR193A MI0000487 hsa-mir-193a 1.999136e+00 0.5118653 0.1625618 3.1487436 0.0016397 0.0032136
ENSG00000207615 MIR515-2 MI0003144 hsa-mir-515-1 4.679061e+00 5.7381517 0.2869688 19.9957365 0.0000000 0.0000000
ENSG00000207615 MIR515-2 MI0003147 hsa-mir-515-2 4.679061e+00 5.7381517 0.2869688 19.9957365 0.0000000 0.0000000
ENSG00000207616 MIR515-1 MI0003144 hsa-mir-515-1 4.679061e+00 5.7381517 0.2869688 19.9957365 0.0000000 0.0000000
ENSG00000207616 MIR515-1 MI0003147 hsa-mir-515-2 4.679061e+00 5.7381517 0.2869688 19.9957365 0.0000000 0.0000000
ENSG00000207617 MIR3074 MI0014181 hsa-mir-3074 9.094640e+00 -1.0114199 0.1074888 -9.4095396 0.0000000 0.0000000
ENSG00000207619 MIR585 MI0003592 hsa-mir-585 1.118633e+00 3.3252407 0.3053415 10.8902354 0.0000000 0.0000000
ENSG00000207620 MIR516A2 MI0003181 hsa-mir-516a-2 7.411675e-01 3.1337796 0.3741599 8.3755090 0.0000000 0.0000000
ENSG00000207624 MIR194-1 MI0000488 hsa-mir-194-1 2.868974e+01 -1.3041349 0.1138054 -11.4593456 0.0000000 0.0000000
ENSG00000207625 MIR128-2 MI0000727 hsa-mir-128-2 6.417321e-01 1.0532552 0.2943843 3.5778242 0.0003465 0.0007416
ENSG00000207628 MIR651 MI0003666 hsa-mir-651 6.921230e-02 -0.1590564 0.8682047 -0.1832015 0.8546399 NA
ENSG00000207630 MIR7-3 MI0000265 hsa-mir-7-3 1.728629e+01 1.1871465 0.1448955 8.1931202 0.0000000 0.0000000
ENSG00000207631 MIR641 MI0003656 hsa-mir-641 1.859290e+01 0.2040460 0.0785940 2.5962022 0.0094261 0.0172281
ENSG00000207633 MIR505 MI0003190 hsa-mir-505 4.754409e+01 -1.6624167 0.0805587 -20.6360947 0.0000000 0.0000000
ENSG00000207635 MIR499A MI0003183 hsa-mir-499a 1.944161e+00 -0.6693174 0.2346852 -2.8519793 0.0043448 0.0083475
ENSG00000207638 MIR99A MI0000101 hsa-mir-99a 8.887816e+01 -1.7598886 0.1545615 -11.3863289 0.0000000 0.0000000
ENSG00000207639 MIR193B MI0003137 hsa-mir-193b 4.150770e+02 0.0972550 0.0775228 1.2545331 0.2096483 0.3017946
ENSG00000207647 MIR153-1 MI0000463 hsa-mir-153-1 7.160378e-01 0.4907763 0.3124831 1.5705690 0.1162828 0.1767788
ENSG00000207649 MIR138-2 MI0000455 hsa-mir-138-2 1.731769e+00 -2.4009806 0.2929376 -8.1962176 0.0000000 0.0000000
ENSG00000207651 MIR28 MI0000086 hsa-mir-28 9.007287e+01 -0.6118035 0.0477529 -12.8118637 0.0000000 0.0000000
ENSG00000207654 MIR128-1 MI0000447 hsa-mir-128-1 4.525647e+00 -0.1114266 0.1587838 -0.7017504 0.4828348 0.6136026
ENSG00000207656 MIR489 MI0003124 hsa-mir-489 2.929505e-01 1.7415692 0.4882937 3.5666429 0.0003616 0.0007705
ENSG00000207691 MIR183 MI0000273 hsa-mir-183 1.358448e+01 1.6850724 0.1622913 10.3830092 0.0000000 0.0000000
ENSG00000207692 MIR592 MI0003604 hsa-mir-592 6.394240e-02 -0.1680918 0.7929651 -0.2119788 0.8321236 NA
ENSG00000207695 MIR184 MI0000481 hsa-mir-184 2.323103e-01 -0.0284429 0.6972719 -0.0407917 0.9674619 0.9732307
ENSG00000207696 MIR659 MI0003683 hsa-mir-659 3.056259e-01 -1.0376194 0.3912898 -2.6517927 0.0080066 0.0147442
ENSG00000207698 MIR32 MI0000090 hsa-mir-32 3.141375e-01 -0.6866091 0.3540948 -1.9390548 0.0524947 0.0865453
ENSG00000207703 MIR7-2 MI0000264 hsa-mir-7-2 1.750451e+01 1.2077187 0.1443605 8.3659938 0.0000000 0.0000000
ENSG00000207708 MIR141 MI0000457 hsa-mir-141 6.209106e-01 -1.1842135 0.3233980 -3.6617840 0.0002505 0.0005408
ENSG00000207712 MIR627 MI0003641 hsa-mir-627 1.325179e-01 -0.1314515 0.6410819 -0.2050463 0.8375360 0.8963104
ENSG00000207713 MIR200C MI0000650 hsa-mir-200c 3.635743e+00 -1.9537244 0.2324637 -8.4044296 0.0000000 0.0000000
ENSG00000207717 MIR551B MI0003575 hsa-mir-551b 2.118366e-01 1.3985251 0.5808491 2.4077253 0.0160523 0.0283822
ENSG00000207721 MIR186 MI0000483 hsa-mir-186 4.138329e+02 -1.4971181 0.1121635 -13.3476379 0.0000000 0.0000000
ENSG00000207725 MIR222 MI0000299 hsa-mir-222 2.530688e+03 4.1775587 0.1046481 39.9200708 0.0000000 0.0000000
ENSG00000207726 MIR455 MI0003513 hsa-mir-455 2.221397e+01 -4.1648401 0.1300151 -32.0335074 0.0000000 0.0000000
ENSG00000207730 MIR200B MI0000342 hsa-mir-200b 4.253994e+02 -2.3452747 0.1136660 -20.6330407 0.0000000 0.0000000
ENSG00000207732 MIR218-1 MI0000294 hsa-mir-218-1 1.048096e+01 2.5676312 0.1484730 17.2935934 0.0000000 0.0000000
ENSG00000207737 MIR181B2 MI0000683 hsa-mir-181b-2 1.130008e+03 0.4162619 0.0550457 7.5621092 0.0000000 0.0000000
ENSG00000207739 MIR218-2 MI0000295 hsa-mir-218-2 9.494956e+00 2.5629108 0.1585912 16.1604887 0.0000000 0.0000000
ENSG00000207741 MIR590 MI0003602 hsa-mir-590 1.029416e-01 -0.1460537 0.8743440 -0.1670437 0.8673356 0.9121978
ENSG00000207743 MIR495 MI0003135 hsa-mir-495 4.367160e-01 -1.3360874 0.4083574 -3.2718577 0.0010684 0.0021457
ENSG00000207744 MIR10B MI0000267 hsa-mir-10b 5.689926e+03 4.3392284 0.1188101 36.5223921 0.0000000 0.0000000
ENSG00000207749 MIR299 MI0000744 hsa-mir-299 1.127982e-01 0.2468591 0.8209789 0.3006887 0.7636519 0.8513365
ENSG00000207751 4.365225e-01 -1.3608654 0.2909392 -4.6774911 0.0000029 0.0000074
ENSG00000207752 MIR199A1 MI0000242 hsa-mir-199a-1 1.584371e+03 -0.1496634 0.0586920 -2.5499813 0.0107729 0.0195433
ENSG00000207754 MIR487B MI0003530 hsa-mir-487b 8.500780e-01 0.3095882 0.2559753 1.2094455 0.2264918 0.3213023
ENSG00000207755 MIR450A2 MI0003187 hsa-mir-450a-2 1.467968e+00 -1.5118375 0.2337695 -6.4672140 0.0000000 0.0000000
ENSG00000207756 MIR580 MI0003587 hsa-mir-580 1.587927e-01 0.4692692 0.6644218 0.7062821 0.4800127 0.6116089
ENSG00000207757 MIR93 MI0000095 hsa-mir-93 4.178210e+02 -0.2245371 0.0502206 -4.4710171 0.0000078 0.0000193
ENSG00000207758 MIR532 MI0003205 hsa-mir-532 2.060325e+01 0.3099612 0.0742584 4.1740891 0.0000299 0.0000699
ENSG00000207759 MIR181A1 MI0000289 hsa-mir-181a-1 3.451886e+03 -0.3285215 0.1012048 -3.2461057 0.0011700 0.0023304
ENSG00000207761 MIR329-1 MI0001725 hsa-mir-329-1 6.603850e-02 0.3794899 1.0754446 0.3528680 0.7241874 NA
ENSG00000207762 MIR329-2 MI0001726 hsa-mir-329-2 6.603850e-02 0.3794899 1.0754446 0.3528680 0.7241874 NA
ENSG00000207767 MIR516A1 MI0003180 hsa-mir-516a-1 7.411675e-01 3.1337796 0.3741599 8.3755090 0.0000000 0.0000000
ENSG00000207768 MIR188 MI0000484 hsa-mir-188 4.910920e-02 0.1907168 0.9167811 0.2080287 0.8352065 NA
ENSG00000207771 MIR550A1 MI0003600 hsa-mir-550a-1 2.220755e+00 0.2601136 0.1864451 1.3951215 0.1629792 0.2388404
ENSG00000207771 MIR550A1 MI0016686 hsa-mir-550b-1 2.220755e+00 0.2601136 0.1864451 1.3951215 0.1629792 0.2388404
ENSG00000207773 MIR642A MI0003657 hsa-mir-642a 8.071870e-02 0.4966375 1.0609342 0.4681134 0.6397035 0.7577071
ENSG00000207778 MIR3591 MI0017383 hsa-mir-122b 3.150181e+03 -10.2751376 0.2460942 -41.7528627 0.0000000 0.0000000
ENSG00000207779 MIR15B MI0000438 hsa-mir-15b 6.915766e-01 0.4805096 0.2901627 1.6560009 0.0977216 0.1509119
ENSG00000207781 MIR625 MI0003639 hsa-mir-625 7.616673e-01 1.0983869 0.3993460 2.7504642 0.0059511 0.0111697
ENSG00000207782 MIR150 MI0000479 hsa-mir-150 6.718673e+00 1.3173072 0.1212861 10.8611573 0.0000000 0.0000000
ENSG00000207784 MIR542 MI0003686 hsa-mir-542 3.178374e+00 -1.4249419 0.1742424 -8.1779303 0.0000000 0.0000000
ENSG00000207785 MIR500A MI0003184 hsa-mir-500a 1.407797e+02 -0.5386795 0.0739684 -7.2825657 0.0000000 0.0000000
ENSG00000207789 MIR26A2 MI0000750 hsa-mir-26a-2 7.454242e+02 -0.6896171 0.0911234 -7.5679433 0.0000000 0.0000000
ENSG00000207797 MIR187 MI0000274 hsa-mir-187 1.741731e+00 -2.6041988 0.2277856 -11.4326751 0.0000000 0.0000000
ENSG00000207798 MIR216A MI0000292 hsa-mir-216a 3.522001e-01 -1.2369801 0.4825721 -2.5633063 0.0103681 0.0188791
ENSG00000207799 MIR520G MI0003166 hsa-mir-520g 2.983678e-01 1.8420987 0.5462379 3.3723377 0.0007453 0.0015477
ENSG00000207800 MIR504 MI0003189 hsa-mir-504 6.075329e+00 2.9848314 0.1707275 17.4830144 0.0000000 0.0000000
ENSG00000207805 MIR483 MI0002467 hsa-mir-483 9.848860e+00 -3.5775530 0.1534164 -23.3192270 0.0000000 0.0000000
ENSG00000207808 MIR27A MI0000085 hsa-mir-27a 2.855053e+00 1.5010960 0.2060002 7.2868684 0.0000000 0.0000000
ENSG00000207811 MIR34B MI0000742 hsa-mir-34b 1.375811e+00 3.3605262 0.2604339 12.9035661 0.0000000 0.0000000
ENSG00000207813 MIR605 MI0003618 hsa-mir-605 9.414260e-02 0.5160198 0.9255793 0.5575101 0.5771790 0.6971865
ENSG00000207820 MIR545 MI0003516 hsa-mir-545 6.545861e-01 0.1190037 0.3169800 0.3754298 0.7073409 0.8141093
ENSG00000207827 MIR30A MI0000088 hsa-mir-30a 3.539226e+04 0.3476951 0.0836474 4.1566770 0.0000323 0.0000747
ENSG00000207863 MIR125B2 MI0000470 hsa-mir-125b-2 1.925192e+02 -0.0454940 0.0527664 -0.8621767 0.3885903 0.5138060
ENSG00000207864 MIR27B MI0000440 hsa-mir-27b 4.611657e+01 -0.8347076 0.0637239 -13.0988189 0.0000000 0.0000000
ENSG00000207870 MIR221 MI0000298 hsa-mir-221 2.400779e+02 1.8632925 0.0730348 25.5123917 0.0000000 0.0000000
ENSG00000207924 MIR196A2 MI0000279 hsa-mir-196a-2 2.465694e+00 4.0735877 0.4314517 9.4415841 0.0000000 0.0000000
ENSG00000207925 MIR516B2 MI0003167 hsa-mir-516b-2 4.324355e-01 2.3809508 0.5145120 4.6275908 0.0000037 0.0000093
ENSG00000207926 MIR135A1 MI0000452 hsa-mir-135a-1 2.274348e-01 -0.9920104 0.6036162 -1.6434456 0.1002908 0.1539053
ENSG00000207933 MIR9-1 MI0000466 hsa-mir-9-1 2.566341e+00 -2.5547276 0.3167592 -8.0652031 0.0000000 0.0000000
ENSG00000207934 MIR654 MI0003676 hsa-mir-654 1.113449e+00 -0.1177107 0.2324476 -0.5063968 0.6125781 0.7344917
ENSG00000207935 MIR204 MI0000284 hsa-mir-204 2.592594e+02 2.6084733 0.1831065 14.2456589 0.0000000 0.0000000
ENSG00000207938 MIR511 MI0003127 hsa-mir-511 3.623372e-01 -0.0315151 0.3970891 -0.0793653 0.9367421 0.9517337
ENSG00000207942 MIR136 MI0000475 hsa-mir-136 1.514806e+00 -1.4503739 0.2880199 -5.0356719 0.0000005 0.0000012
ENSG00000207944 MIR574 MI0003581 hsa-mir-574 1.587535e+00 -0.0368051 0.2436192 -0.1510764 0.8799155 0.9175187
ENSG00000207946 MIR516B1 MI0003172 hsa-mir-516b-1 3.850437e+00 5.5900538 0.2658970 21.0233843 0.0000000 0.0000000
ENSG00000207947 MIR152 MI0000462 hsa-mir-152 1.961742e+01 -0.0568210 0.0757240 -0.7503696 0.4530321 0.5826483
ENSG00000207948 MIR328 MI0000804 hsa-mir-328 3.123698e+00 2.3684173 0.1659406 14.2726848 0.0000000 0.0000000
ENSG00000207954 MIR138-1 MI0000476 hsa-mir-138-1 2.145584e+00 -2.4724898 0.2730203 -9.0560665 0.0000000 0.0000000
ENSG00000207956 MIR579 MI0003586 hsa-mir-579 1.449169e-01 -0.1036931 0.5714021 -0.1814713 0.8559976 0.9070276
ENSG00000207960 MIR153-2 MI0000464 hsa-mir-153-2 8.374067e-01 0.6612287 0.2774335 2.3833769 0.0171546 0.0301131
ENSG00000207962 MIR30C1 MI0000736 hsa-mir-30c-1 1.691508e+04 0.1583596 0.0847514 1.8685196 0.0616897 0.0990742
ENSG00000207965 MIR629 MI0003643 hsa-mir-629 2.426578e-01 0.0907668 0.4662792 0.1946619 0.8456577 0.9030218
ENSG00000207970 MIR660 MI0003684 hsa-mir-660 8.938730e+01 -0.1309884 0.0527178 -2.4847095 0.0129657 0.0232620
ENSG00000207971 MIR125B1 MI0000446 hsa-mir-125b-1 1.019648e+02 -0.6884549 0.1052727 -6.5397264 0.0000000 0.0000000
ENSG00000207973 MIR589 MI0003599 hsa-mir-589 1.697035e+01 0.9455275 0.0816565 11.5793278 0.0000000 0.0000000
ENSG00000207975 MIR181B1 MI0000270 hsa-mir-181b-1 1.118538e+03 0.4320880 0.0560464 7.7094664 0.0000000 0.0000000
ENSG00000207978 MIR154 MI0000480 hsa-mir-154 5.800227e-01 1.5232919 0.3000060 5.0775379 0.0000004 0.0000010
ENSG00000207980 MIR23A MI0000079 hsa-mir-23a 6.432416e+01 1.5328534 0.0616285 24.8724954 0.0000000 0.0000000
ENSG00000207982 MIR548B MI0003596 hsa-mir-548b 9.017930e-02 -0.4803840 0.8416539 -0.5707619 0.5681610 0.6914279
ENSG00000207988 MIR576 MI0003583 hsa-mir-576 2.953744e+00 -2.4335581 0.2368458 -10.2748620 0.0000000 0.0000000
ENSG00000207989 MIR493 MI0003132 hsa-mir-493 1.650402e-01 0.3599123 0.6182577 0.5821396 0.5604727 0.6854904
ENSG00000207990 MIR182 MI0000272 hsa-mir-182 1.343169e+03 2.5727762 0.1501800 17.1312784 0.0000000 0.0000000
ENSG00000207993 MIR134 MI0000474 hsa-mir-134 5.407015e+00 0.6075986 0.1201575 5.0566865 0.0000004 0.0000011
ENSG00000207994 MIR100 MI0000102 hsa-mir-100 2.002330e+02 -2.6565489 0.2311588 -11.4923110 0.0000000 0.0000000
ENSG00000207996 MIR301A MI0000745 hsa-mir-301a 3.992094e+01 0.0694605 0.1192427 0.5825133 0.5602210 0.6854904
ENSG00000208000 MIR509-1 MI0003196 hsa-mir-509-1 1.301818e+00 2.3854400 0.2969577 8.0329279 0.0000000 0.0000000
ENSG00000208000 MIR509-1 MI0005530 hsa-mir-509-2 1.301818e+00 2.3854400 0.2969577 8.0329279 0.0000000 0.0000000
ENSG00000208001 MIR431 MI0001721 hsa-mir-431 1.826952e+00 0.3645063 0.2095121 1.7397864 0.0818965 0.1289210
ENSG00000208005 MIR503 MI0003188 hsa-mir-503 5.620056e-01 -1.0902394 0.2971579 -3.6688888 0.0002436 0.0005307
ENSG00000208006 MIR16-1 MI0000070 hsa-mir-16-1 8.199415e+01 -0.6634486 0.0945040 -7.0203248 0.0000000 0.0000000
ENSG00000208008 MIR125A MI0000469 hsa-mir-125a 6.786775e+03 1.4966374 0.0670454 22.3227470 0.0000000 0.0000000
ENSG00000208009 MIR130A MI0000448 hsa-mir-130a 5.332753e+01 -2.2195149 0.2203982 -10.0704757 0.0000000 0.0000000
ENSG00000208012 MIRLET7F2 MI0000068 hsa-let-7f-2 2.279075e+02 -1.4325398 0.1574225 -9.0999675 0.0000000 0.0000000
ENSG00000208013 MIR652 MI0003667 hsa-mir-652 5.623671e+00 1.5908722 0.1490311 10.6747667 0.0000000 0.0000000
ENSG00000208014 MIR653 MI0003674 hsa-mir-653 1.088908e-01 0.9261898 0.8871432 1.0440139 0.2964789 0.4007804
ENSG00000208015 MIR362 MI0000762 hsa-mir-362 6.756657e+01 -1.4436032 0.1052963 -13.7099083 0.0000000 0.0000000
ENSG00000208017 MIR140 MI0000456 hsa-mir-140 4.572458e+02 0.3451342 0.0503188 6.8589472 0.0000000 0.0000000
ENSG00000208022 MIR618 MI0003632 hsa-mir-618 1.138412e+00 -3.2830825 0.5742814 -5.7168531 0.0000000 0.0000000
ENSG00000208023 MIR185 MI0000482 hsa-mir-185 2.183361e+00 -1.2722417 0.1704217 -7.4652578 0.0000000 0.0000000
ENSG00000208024 MIR199A2 MI0000281 hsa-mir-199a-2 1.594614e+03 -0.1396430 0.0589884 -2.3672964 0.0179186 0.0312295
ENSG00000208027 MIR485 MI0002469 hsa-mir-485 3.472631e+00 0.8531036 0.1552975 5.4933486 0.0000000 0.0000001
ENSG00000208028 MIR616 MI0003629 hsa-mir-616 1.156903e+00 0.2338453 0.2178383 1.0734813 0.2830552 0.3869215
ENSG00000208036 MIR106B MI0000734 hsa-mir-106b 8.312315e+00 0.0662216 0.0834018 0.7940069 0.4271914 0.5559184
ENSG00000208037 MIR320A 8.415348e+02 0.5868885 0.0570895 10.2801381 0.0000000 0.0000000
ENSG00000211137 MIR190A MI0000486 hsa-mir-190a 1.427590e+02 2.7253937 0.1064346 25.6062781 0.0000000 0.0000000
ENSG00000211514 MIR454 MI0003820 hsa-mir-454 1.539288e+02 0.6722912 0.0583194 11.5277420 0.0000000 0.0000000
ENSG00000211520 MIR216B MI0005569 hsa-mir-216b 7.873500e-02 -0.2454122 0.8291771 -0.2959708 0.7672524 0.8513365
ENSG00000211538 MIR501 MI0003185 hsa-mir-501 6.041084e+01 -0.5621192 0.0700182 -8.0281841 0.0000000 0.0000000
ENSG00000211543 MIR320B1 3.219530e+00 2.1245724 0.2004760 10.5976389 0.0000000 0.0000000
ENSG00000211563 MIR3065 MI0014228 hsa-mir-3065 1.513361e+01 -1.6948742 0.1253704 -13.5189378 0.0000000 0.0000000
ENSG00000211568 MIR670 MI0003933 hsa-mir-670 1.324506e-01 0.9061796 0.8357114 1.0843212 0.2782224 0.3824579
ENSG00000211574 MIR770 MI0005118 hsa-mir-770 2.221510e-01 0.1319560 0.4738243 0.2784915 0.7806351 0.8544751
ENSG00000211575 MIR760 MI0005567 hsa-mir-760 4.337561e-01 1.2578038 0.4043843 3.1104170 0.0018682 0.0036468
ENSG00000211578 MIR766 MI0003836 hsa-mir-766 2.359565e-01 -0.5110624 0.4204296 -1.2155719 0.2241481 0.3192739
ENSG00000211580 MIR769 MI0003834 hsa-mir-769 2.698245e+00 -0.4196476 0.2023572 -2.0737962 0.0380982 0.0641101
ENSG00000211582 MIR758 MI0003757 hsa-mir-758 1.059159e+00 0.5881122 0.2900508 2.0276178 0.0425993 0.0711933
ENSG00000211583 MIR767 MI0003763 hsa-mir-767 1.257051e-01 1.0264931 1.1995712 0.8557167 0.3921545 0.5158259
ENSG00000211590 MIR802 MI0003906 hsa-mir-802 4.025638e-01 -1.9809849 0.6035554 -3.2821925 0.0010300 0.0020771
ENSG00000211591 MIR762 MI0003892 hsa-mir-762 2.940148e-01 1.3202785 0.4114924 3.2085127 0.0013342 0.0026361
ENSG00000211991 MIR676 MI0016436 hsa-mir-676 5.404620e-02 0.0156390 0.7811563 0.0200203 0.9840271 NA
ENSG00000211997 MIR708 MI0005543 hsa-mir-708 6.786051e+01 4.9015912 0.1219643 40.1887246 0.0000000 0.0000000
ENSG00000212013 MIR509-2 MI0005530 hsa-mir-509-2 1.301818e+00 2.3854400 0.2969577 8.0329279 0.0000000 0.0000000
ENSG00000212014 MIR509-3 MI0005717 hsa-mir-509-3 1.276839e+00 2.3503863 0.3000152 7.8342254 0.0000000 0.0000000
ENSG00000212017 MIR548U MI0014168 hsa-mir-548u 9.878570e-02 0.0983839 1.1098738 0.0886443 0.9293646 0.9507198
ENSG00000212024 MIR550A3 MI0003762 hsa-mir-550a-3 6.850810e-02 0.1247995 0.8116958 0.1537515 0.8778056 NA
ENSG00000212027 MIR374B MI0005566 hsa-mir-374b 4.681758e+00 -1.4488619 0.2578643 -5.6186994 0.0000000 0.0000001
ENSG00000212027 MIR374B MI0016684 hsa-mir-374c 4.681758e+00 -1.4488619 0.2578643 -5.6186994 0.0000000 0.0000001
ENSG00000212040 MIR543 MI0005565 hsa-mir-543 2.479691e-01 -0.8033339 0.4692643 -1.7119006 0.0869150 0.1356675
ENSG00000212102 MIR301B MI0005568 hsa-mir-301b 3.139726e+00 -3.2471158 0.3737653 -8.6875795 0.0000000 0.0000000
ENSG00000215930 MIR942 MI0005767 hsa-mir-942 2.352989e-01 0.1855233 0.4567812 0.4061536 0.6846298 0.7992807
ENSG00000215938 MIR190B MI0005545 hsa-mir-190b 1.327470e-01 0.2013300 0.5409124 0.3722045 0.7097406 0.8149492
ENSG00000215939 MIR873 MI0005564 hsa-mir-873 9.432970e-02 0.0893716 0.9316876 0.0959244 0.9235806 0.9499149
ENSG00000216001 MIR450B MI0005531 hsa-mir-450b 1.895840e+00 -1.7580624 0.3304106 -5.3208409 0.0000001 0.0000003
ENSG00000216005 MIR888 MI0005537 hsa-mir-888 3.708870e-02 -0.1083169 1.4481364 -0.0747974 0.9403759 NA
ENSG00000216009 MIR874 MI0005532 hsa-mir-874 1.108002e+02 -0.7070176 0.0877935 -8.0531891 0.0000000 0.0000000
ENSG00000216058 MIR944 MI0005769 hsa-mir-944 5.637635e-01 -0.6169467 0.3605026 -1.7113514 0.0870163 0.1356675
ENSG00000216077 MIR887 MI0005562 hsa-mir-887 1.114436e+02 2.0590248 0.0981820 20.9715082 0.0000000 0.0000000
ENSG00000216101 MIR877 MI0005561 hsa-mir-877 7.009417e+00 1.0665528 0.1526929 6.9849557 0.0000000 0.0000000
ENSG00000216135 MIR885 MI0005560 hsa-mir-885 5.436763e+00 -5.4161971 0.2351976 -23.0282818 0.0000000 0.0000000
ENSG00000216141 MIR941-2 MI0005764 hsa-mir-941-2 3.702866e+02 -1.3407707 0.1107095 -12.1107124 0.0000000 0.0000000
ENSG00000216141 MIR941-2 MI0005765 hsa-mir-941-3 3.702866e+02 -1.3407707 0.1107095 -12.1107124 0.0000000 0.0000000
ENSG00000216141 MIR941-2 MI0005766 hsa-mir-941-4 3.702866e+02 -1.3407707 0.1107095 -12.1107124 0.0000000 0.0000000
ENSG00000216141 MIR941-2 MI0031520 hsa-mir-941-5 3.702866e+02 -1.3407707 0.1107095 -12.1107124 0.0000000 0.0000000
ENSG00000216179 MIR541 MI0005539 hsa-mir-541 1.797887e-01 1.0312481 0.7352312 1.4026175 0.1607309 0.2369689
ENSG00000216195 MIR941-4 MI0005764 hsa-mir-941-2 3.702925e+02 -1.3408028 0.1107049 -12.1115011 0.0000000 0.0000000
ENSG00000216195 MIR941-4 MI0005765 hsa-mir-941-3 3.702925e+02 -1.3408028 0.1107049 -12.1115011 0.0000000 0.0000000
ENSG00000216195 MIR941-4 MI0005766 hsa-mir-941-4 3.702925e+02 -1.3408028 0.1107049 -12.1115011 0.0000000 0.0000000
ENSG00000216195 MIR941-4 MI0031520 hsa-mir-941-5 3.702925e+02 -1.3408028 0.1107049 -12.1115011 0.0000000 0.0000000
ENSG00000221052 MIR1266 MI0006403 hsa-mir-1266 9.850241e-01 1.0242099 0.2496918 4.1018958 0.0000410 0.0000939
ENSG00000221063 MIR1296 MI0003780 hsa-mir-1296 2.816056e+00 -1.7746229 0.2219062 -7.9971755 0.0000000 0.0000000
ENSG00000221120 MIR1224 MI0003764 hsa-mir-1224 1.087044e-01 0.6768933 0.8661539 0.7814931 0.4345125 0.5624459
ENSG00000221184 2.372507e+00 1.3816727 0.2043938 6.7598556 0.0000000 0.0000000
ENSG00000221203 MIR1262 MI0006397 hsa-mir-1262 7.024020e-02 0.0716662 0.8457150 0.0847404 0.9324678 NA
ENSG00000221214 MIR548E MI0006344 hsa-mir-548e 4.708138e-01 -0.3813806 0.3011348 -1.2664780 0.2053420 0.2973498
ENSG00000221240 MIR1258 MI0006392 hsa-mir-1258 2.156558e-01 -0.7508978 0.7587038 -0.9897115 0.3223152 0.4345022
ENSG00000221265 MIR1255A MI0006389 hsa-mir-1255a 1.058995e-01 -0.0650123 0.7534382 -0.0862875 0.9312379 0.9507198
ENSG00000221288 MIR663B MI0006336 hsa-mir-663b 1.605342e+00 0.1001386 0.3420891 0.2927268 0.7697310 0.8513365
ENSG00000221333 MIR548K MI0006354 hsa-mir-548k 3.283740e-02 -0.0496332 1.1071787 -0.0448285 0.9642440 NA
ENSG00000221365 MIR1228 MI0006318 hsa-mir-1228 3.571178e-01 1.4135558 0.4083879 3.4613067 0.0005376 0.0011307
ENSG00000221390 MIR1295A MI0006357 hsa-mir-1295a 1.770446e+00 -3.8079197 0.2556403 -14.8956177 0.0000000 0.0000000
ENSG00000221394 MIR1229 MI0006319 hsa-mir-1229 1.762344e+00 0.9280871 0.2096250 4.4273687 0.0000095 0.0000235
ENSG00000221406 MIR320B2 3.621795e+00 1.9978464 0.1829711 10.9189168 0.0000000 0.0000000
ENSG00000221445 MIR1301 MI0003815 hsa-mir-1301 1.723462e+02 0.6110291 0.1166340 5.2388577 0.0000002 0.0000004
ENSG00000221463 MIR1277 MI0006419 hsa-mir-1277 1.918129e-01 0.8981483 0.5670849 1.5837985 0.1132396 0.1726904
ENSG00000221464 MIR1271 MI0003814 hsa-mir-1271 2.560774e+00 1.0445540 0.1939098 5.3868030 0.0000001 0.0000002
ENSG00000221502 MIR1245A MI0006380 hsa-mir-1245a 1.178773e-01 0.6893095 0.6552166 1.0520330 0.2927844 0.3968855
ENSG00000221502 MIR1245A MI0017431 hsa-mir-1245b 1.178773e-01 0.6893095 0.6552166 1.0520330 0.2927844 0.3968855
ENSG00000221540 MIR1180 MI0006273 hsa-mir-1180 1.687908e-01 0.9374073 0.6109235 1.5344104 0.1249287 0.1881642
ENSG00000221552 MIR1303 MI0006370 hsa-mir-1303 4.796579e-01 -1.4670205 0.3438251 -4.2667642 0.0000198 0.0000477
ENSG00000221585 MIR1226 MI0006313 hsa-mir-1226 4.218071e-01 1.4718909 0.4002646 3.6772945 0.0002357 0.0005158
ENSG00000221656 MIR1225 MI0006311 hsa-mir-1225 2.733585e-01 1.2994910 0.4888926 2.6580298 0.0078599 0.0145289
ENSG00000221760 MIR548J MI0006345 hsa-mir-548j 1.082542e+00 -1.0769396 0.2594379 -4.1510503 0.0000331 0.0000762
ENSG00000221792 MIR1282 MI0006429 hsa-mir-1282 1.434352e-01 0.0385050 0.8877436 0.0433740 0.9654034 0.9732307
ENSG00000222071 MIR1915 MI0008336 hsa-mir-1915 2.300405e-01 0.2146660 0.6082541 0.3529217 0.7241472 0.8237385
ENSG00000222532 MIR1468 MI0003782 hsa-mir-1468 1.214816e-01 -0.4459546 0.5403356 -0.8253289 0.4091849 0.5353411
ENSG00000223109 MIR1538 MI0007259 hsa-mir-1538 3.837849e-01 1.0089060 0.3785277 2.6653423 0.0076910 0.0142708
ENSG00000238517 MIR1270 MI0006407 hsa-mir-1270 1.422468e+00 1.3254563 0.2252398 5.8846464 0.0000000 0.0000000
ENSG00000238705 MIR1976 MI0009986 hsa-mir-1976 4.318988e-01 0.5372511 0.3629201 1.4803566 0.1387781 0.2071062
ENSG00000239057 MIR500B MI0015903 hsa-mir-500b 6.050853e+00 -0.5090151 0.1195471 -4.2578631 0.0000206 0.0000494
ENSG00000251856 MIR449C MI0003823 hsa-mir-449c 5.742671e-01 0.1244607 0.3273468 0.3802106 0.7037891 0.8119363
ENSG00000251862 MIR1343 MI0017320 hsa-mir-1343 7.319695e-01 0.2783753 0.2884949 0.9649228 0.3345835 0.4485625
ENSG00000252695 MIR2276 MI0011282 hsa-mir-2276 3.556613e-01 -0.7372932 0.3755161 -1.9634129 0.0495982 0.0826073
ENSG00000253008 MIR2355 MI0015873 hsa-mir-2355 7.155442e-01 -0.4977158 0.2883640 -1.7259982 0.0843477 0.1323527
ENSG00000253030 MIR2116 MI0010635 hsa-mir-2116 2.120965e-01 -0.0545814 0.5332685 -0.1023526 0.9184768 0.9496116
ENSG00000254324 MIR151A MI0000809 hsa-mir-151a 2.772828e+02 -0.9074192 0.0333100 -27.2416746 0.0000000 0.0000000
ENSG00000263403 MIR4673 MI0017304 hsa-mir-4673 2.066055e-01 1.1737035 0.6242497 1.8801825 0.0600832 0.0977353
ENSG00000263407 MIR4660 MI0017288 hsa-mir-4660 6.737680e-02 0.1247426 0.9742861 0.1280349 0.8981214 NA
ENSG00000263414 MIR3187 MI0014231 hsa-mir-3187 2.400752e-01 0.7912765 0.4418411 1.7908623 0.0733154 0.1157861
ENSG00000263436 MIR3158-1 MI0014186 hsa-mir-3158-1 6.560150e-02 0.3225814 1.3582741 0.2374936 0.8122739 NA
ENSG00000263436 MIR3158-1 MI0014187 hsa-mir-3158-2 6.560150e-02 0.3225814 1.3582741 0.2374936 0.8122739 NA
ENSG00000263453 6.247681e+00 2.5438290 0.2618354 9.7153732 0.0000000 0.0000000
ENSG00000263456 MIR5189 MI0018168 hsa-mir-5189 2.495045e-01 -0.2789086 0.4097396 -0.6806973 0.4960630 0.6239143
ENSG00000263468 MIR3130-2 MI0014147 hsa-mir-3130-1 2.354737e-01 0.3996712 0.6677832 0.5985044 0.5495034 0.6788802
ENSG00000263468 MIR3130-2 MI0014148 hsa-mir-3130-2 2.354737e-01 0.3996712 0.6677832 0.5985044 0.5495034 0.6788802
ENSG00000263511 MIR5699 MI0019306 hsa-mir-5699 8.026370e-02 -0.3547225 0.7779367 -0.4559786 0.6484053 0.7661545
ENSG00000263572 MIR7853 MI0025523 hsa-mir-7853 2.117589e+02 6.8833243 0.2022815 34.0284474 0.0000000 0.0000000
ENSG00000263628 MIR3155A MI0014183 hsa-mir-3155a 6.927970e-02 0.2966172 1.0701994 0.2771607 0.7816567 NA
ENSG00000263641 MIR4777 MI0017421 hsa-mir-4777 1.502110e-02 0.2109939 1.8912112 0.1115655 0.9111679 NA
ENSG00000263642 MIR4802 MI0017450 hsa-mir-4802 2.780843e-01 -0.7540230 0.3874776 -1.9459782 0.0516574 0.0854535
ENSG00000263735 MIR4662B MI0017293 hsa-mir-4662b 1.301092e-01 -0.4298901 0.6148275 -0.6992045 0.4844243 0.6140235
ENSG00000263744 MIR3664 MI0016065 hsa-mir-3664 1.428519e-01 -0.6618310 0.6029252 -1.0976999 0.2723356 0.3754230
ENSG00000263813 MIR3679 MI0016080 hsa-mir-3679 2.553691e-01 0.2662535 0.5455648 0.4880327 0.6255267 0.7446194
ENSG00000263816 MIR548AW MI0019283 hsa-mir-548aw 1.883429e-01 0.6502887 0.5461860 1.1905995 0.2338109 0.3288176
ENSG00000263963 1.194331e+01 -0.1745215 0.1613769 -1.0814529 0.2794957 0.3831290
ENSG00000264063 2.766992e+00 -1.1094186 0.2808213 -3.9506213 0.0000779 0.0001761
ENSG00000264073 MIR3199-1 MI0014247 hsa-mir-3199-1 8.503388e-01 1.4690811 0.2946063 4.9865913 0.0000006 0.0000016
ENSG00000264073 MIR3199-1 MI0014248 hsa-mir-3199-2 8.503388e-01 1.4690811 0.2946063 4.9865913 0.0000006 0.0000016
ENSG00000264089 MIR3681 MI0016082 hsa-mir-3681 4.241650e-02 0.0127373 1.0609610 0.0120054 0.9904213 NA
ENSG00000264141 MIR3928 MI0016438 hsa-mir-3928 1.043631e+00 1.0761275 0.2460898 4.3729062 0.0000123 0.0000301
ENSG00000264157 MIR3127 MI0014144 hsa-mir-3127 6.194462e-01 -0.2811283 0.3443650 -0.8163673 0.4142901 0.5405710
ENSG00000264158 MIR4670 MI0017301 hsa-mir-4670 8.443300e-02 0.4514410 1.0028187 0.4501721 0.6525863 0.7692322
ENSG00000264249 MIR3912 MI0016416 hsa-mir-3912 6.248334e-01 -0.9351849 0.3075297 -3.0409581 0.0023583 0.0045488
ENSG00000264268 MIR4767 MI0017408 hsa-mir-4767 1.068336e+00 1.6994779 0.2786946 6.0979933 0.0000000 0.0000000
ENSG00000264292 MIR2467 MI0017432 hsa-mir-2467 2.972043e+00 -0.1241087 0.2049660 -0.6055089 0.5448409 0.6748284
ENSG00000264297 MIR4433B MI0025511 hsa-mir-4433b 8.743520e-02 0.5321882 1.0620091 0.5011145 0.6162906 0.7371318
ENSG00000264357 MIR4648 MI0017275 hsa-mir-4648 2.581095e-01 1.3736231 0.5535223 2.4816040 0.0130793 0.0233798
ENSG00000264405 MIR3913-1 MI0016417 hsa-mir-3913-1 6.776748e-01 0.5647227 0.3971139 1.4220672 0.1550068 0.2299188
ENSG00000264405 MIR3913-1 MI0016418 hsa-mir-3913-2 6.776748e-01 0.5647227 0.3971139 1.4220672 0.1550068 0.2299188
ENSG00000264462 MIR3648-2 MI0016048 hsa-mir-3648-1 8.422949e+00 -2.0520168 0.2484163 -8.2603966 0.0000000 0.0000000
ENSG00000264462 MIR3648-2 MI0031512 hsa-mir-3648-2 8.422949e+00 -2.0520168 0.2484163 -8.2603966 0.0000000 0.0000000
ENSG00000264500 MIR3124 MI0014140 hsa-mir-3124 9.474060e-02 -0.0718329 0.9247163 -0.0776811 0.9380818 0.9517337
ENSG00000264571 MIR4529 MI0016896 hsa-mir-4529 1.225821e-01 0.6394846 0.9886249 0.6468424 0.5177339 0.6478312
ENSG00000264574 2.371225e+00 1.3836790 0.2058500 6.7217829 0.0000000 0.0000000
ENSG00000264585 MIR4449 MI0016792 hsa-mir-4449 6.370739e-01 0.2106056 0.3334623 0.6315725 0.5276662 0.6585707
ENSG00000264607 MIR3173 MI0014204 hsa-mir-3173 2.788711e-01 1.1053169 0.4464390 2.4758519 0.0132919 0.0236731
ENSG00000264614 MIR5588 MI0019147 hsa-mir-5588 4.058454e-01 -1.7424226 0.3213302 -5.4225301 0.0000001 0.0000002
ENSG00000264621 MIR5591 MI0019151 hsa-mir-5591 4.594890e-02 0.1859863 1.7901652 0.1038934 0.9172540 NA
ENSG00000264661 MIR3200 MI0014249 hsa-mir-3200 1.060554e+00 1.1122042 0.2360734 4.7112644 0.0000025 0.0000063
ENSG00000264725 MIR3129 MI0014146 hsa-mir-3129 4.470315e-01 1.2889097 0.3878157 3.3235108 0.0008889 0.0018227
ENSG00000264732 MIR4638 MI0017265 hsa-mir-4638 4.448067e-01 0.7156138 0.3935745 1.8182421 0.0690271 0.1100825
ENSG00000264737 MIR4511 MI0016877 hsa-mir-4511 4.028951e-01 1.0651960 0.4061855 2.6224375 0.0087303 0.0160165
ENSG00000264755 MIR3131 MI0014151 hsa-mir-3131 1.121555e-01 -0.1538395 0.8259738 -0.1862523 0.8522469 0.9070276
ENSG00000264773 MIR4420 MI0016757 hsa-mir-4420 7.819140e-02 0.6353385 1.1767965 0.5398882 0.5892742 0.7100390
ENSG00000264796 MIR5009 MI0017877 hsa-mir-5009 9.359380e-02 0.3024659 0.7809918 0.3872843 0.6985457 0.8077970
ENSG00000264803 MIR378C MI0015825 hsa-mir-378c 3.873557e-01 1.0001746 0.3549239 2.8179975 0.0048324 0.0091760
ENSG00000264857 MIR5696 MI0019303 hsa-mir-5696 3.400700e-01 0.0961073 0.3455834 0.2781018 0.7809342 0.8544751
ENSG00000264864 MIR3613 MI0016003 hsa-mir-3613 5.100648e-01 0.1809049 0.3217536 0.5622467 0.5739479 0.6950040
ENSG00000265075 MIR3622B MI0016014 hsa-mir-3622b 1.223541e-01 0.2527691 0.9622869 0.2626754 0.7928008 0.8623944
ENSG00000265083 MIR3691 MI0016092 hsa-mir-3691 8.474627e-01 0.9073997 0.2728100 3.3261235 0.0008806 0.0018133
ENSG00000265092 MIR4484 MI0016845 hsa-mir-4484 1.145133e-01 -0.4072493 0.8639155 -0.4713994 0.6373555 0.7567628
ENSG00000265134 MIR3190 MI0014235 hsa-mir-3190 3.911146e-01 1.1015103 0.3902433 2.8226245 0.0047632 0.0090799
ENSG00000265134 MIR3190 MI0014236 hsa-mir-3191 3.911146e-01 1.1015103 0.3902433 2.8226245 0.0047632 0.0090799
ENSG00000265144 MIR548AM MI0016904 hsa-mir-548am 2.660380e-02 0.2005694 1.6474928 0.1217422 0.9031032 NA
ENSG00000265154 MIR151B MI0003772 hsa-mir-151b 1.943832e+00 1.0015270 0.2375231 4.2165466 0.0000248 0.0000582
ENSG00000265178 MIR4728 MI0017365 hsa-mir-4728 4.292245e+00 0.9252785 0.1721521 5.3747736 0.0000001 0.0000002
ENSG00000265201 MIR4677 MI0017308 hsa-mir-4677 5.467168e-01 -1.3707339 0.3242192 -4.2277994 0.0000236 0.0000559
ENSG00000265258 MIR4686 MI0017318 hsa-mir-4686 3.157961e+00 -4.6683177 0.2444595 -19.0964878 0.0000000 0.0000000
ENSG00000265370 MIR4682 MI0017314 hsa-mir-4682 7.970750e-02 0.1035943 0.8524551 0.1215246 0.9032755 0.9378691
ENSG00000265390 MIR4999 MI0017865 hsa-mir-4999 6.275480e-02 -0.0785538 0.9116626 -0.0861654 0.9313349 NA
ENSG00000265395 MIR3944 MI0016601 hsa-mir-3944 5.613558e-01 -1.4667029 0.3477495 -4.2177000 0.0000247 0.0000582
ENSG00000265538 MIR4421 MI0016758 hsa-mir-4421 7.469158e-01 2.4462046 0.3041283 8.0433304 0.0000000 0.0000000
ENSG00000265606 MIR4695 MI0017328 hsa-mir-4695 1.817674e-01 0.4786880 0.6729795 0.7112965 0.4769005 0.6092342
ENSG00000265658 MIR3690 MI0016091 hsa-mir-3690-1 2.804515e+00 0.7418748 0.2253426 3.2922079 0.0009940 0.0020128
ENSG00000265658 MIR3690 MI0023561 hsa-mir-3690-2 2.804515e+00 0.7418748 0.2253426 3.2922079 0.0009940 0.0020128
ENSG00000265820 MIR3177 MI0014211 hsa-mir-3177 1.629799e-01 1.1245265 0.6720631 1.6732455 0.0942790 0.1460576
ENSG00000265867 MIR4516 MI0016882 hsa-mir-4516 6.977726e-01 2.1251393 0.3829222 5.5497933 0.0000000 0.0000001
ENSG00000265871 MIR3174 MI0014208 hsa-mir-3174 6.711768e-01 -1.1532224 0.3291896 -3.5032169 0.0004597 0.0009753
ENSG00000265954 MIR4749 MI0017388 hsa-mir-4749 1.138767e-01 -0.1224970 0.7942714 -0.1542256 0.8774318 0.9170279
ENSG00000265976 MIR4725 MI0017362 hsa-mir-4725 7.224390e-01 2.7034132 0.2851319 9.4812735 0.0000000 0.0000000
ENSG00000266019 MIR3609 MI0015999 hsa-mir-3609 4.830887e+00 0.6888793 0.2228135 3.0917304 0.0019899 0.0038535
ENSG00000266041 MIR4690 MI0017323 hsa-mir-4690 1.638278e-01 0.1305917 0.5738767 0.2275605 0.8199880 0.8802191
ENSG00000266104 MIR4326 MI0015866 hsa-mir-4326 7.807566e+00 1.3840162 0.2047804 6.7585385 0.0000000 0.0000000
ENSG00000266107 MIR4525 MI0016892 hsa-mir-4525 1.280602e-01 0.1268550 0.6976580 0.1818297 0.8557163 0.9070276
ENSG00000266124 MIR5587 MI0019144 hsa-mir-5587 2.347373e-01 -0.4100914 0.4852887 -0.8450462 0.3980850 0.5222191
ENSG00000266144 MIR4654 MI0017282 hsa-mir-4654 1.386272e-01 0.1983956 0.6872690 0.2886724 0.7728321 0.8513365
ENSG00000266194 MIR4661 MI0017289 hsa-mir-4661 9.176280e-02 0.3112228 0.8668384 0.3590320 0.7195711 0.8204456
ENSG00000266204 MIR5589 MI0019148 hsa-mir-5589 7.528995e+00 -5.9420668 0.2403550 -24.7220395 0.0000000 0.0000000
ENSG00000266206 MIR3926-1 MI0016434 hsa-mir-3926-1 1.857794e-01 1.3514845 1.1268742 1.1993215 0.2304030 0.3249614
ENSG00000266228 MIR3611 MI0016001 hsa-mir-3611 5.658900e-02 -0.1424701 1.0059070 -0.1416335 0.8873695 NA
ENSG00000266235 MIR3176 MI0014210 hsa-mir-3176 4.989935e-01 -0.9575728 0.3091386 -3.0975520 0.0019513 0.0037937
ENSG00000266240 MIR5091 MI0017980 hsa-mir-5091 3.671444e-01 0.2662343 0.3486316 0.7636551 0.4450728 0.5745914
ENSG00000266276 MIR4743 MI0017381 hsa-mir-4743 2.469513e-01 1.4929989 0.6684484 2.2335290 0.0255141 0.0438411
ENSG00000266297 MIR744 MI0005559 hsa-mir-744 6.280277e+00 0.3358037 0.1209382 2.7766555 0.0054921 0.0103481
ENSG00000266305 MIR4518 MI0016884 hsa-mir-4518 1.187797e-01 -0.2346592 0.8052251 -0.2914206 0.7707297 0.8513365
ENSG00000266320 MIR3909 MI0016413 hsa-mir-3909 5.416894e-01 -0.5394704 0.2887473 -1.8683136 0.0617184 0.0990742
ENSG00000266383 MIR5002 MI0017868 hsa-mir-5002 7.867324e-01 1.9979373 0.3107830 6.4287218 0.0000000 0.0000000
ENSG00000266392 MIR4740 MI0017378 hsa-mir-4740 1.553286e-01 1.1616498 0.7731035 1.5025799 0.1329474 0.1996257
ENSG00000266407 MIR3157 MI0014185 hsa-mir-3157 4.324540e-02 0.3017281 1.1670713 0.2585344 0.7959945 NA
ENSG00000266415 MIR4636 MI0017263 hsa-mir-4636 2.106022e-01 -0.1572429 0.4609605 -0.3411202 0.7330131 0.8318847
ENSG00000266437 MIR4746 MI0017385 hsa-mir-4746 1.762742e-01 -0.1563204 0.4933751 -0.3168388 0.7513660 0.8448539
ENSG00000266463 MIR3196 MI0014241 hsa-mir-3196 2.168419e-01 0.8049626 0.5414452 1.4866926 0.1370960 0.2052235
ENSG00000266509 MIR3934 MI0016590 hsa-mir-3934 4.286337e-01 1.5288424 0.3934218 3.8860138 0.0001019 0.0002271
ENSG00000266533 MIR3619 MI0016009 hsa-mir-3619 2.280430e-01 1.2439701 0.4951804 2.5121551 0.0119996 0.0216082
ENSG00000266555 MIR3145 MI0014170 hsa-mir-3145 6.197290e-02 -0.3288653 0.9904803 -0.3320261 0.7398696 NA
ENSG00000266581 MIR3166 MI0014196 hsa-mir-3166 1.289334e-01 0.6942285 1.2085672 0.5744227 0.5656818 0.6901318
ENSG00000266618 MIR4742 MI0017380 hsa-mir-4742 6.552202e-01 1.1048016 0.3179362 3.4749155 0.0005110 0.0010795
ENSG00000266665 MIR4739 MI0017377 hsa-mir-4739 3.521466e-01 -1.3812337 0.5767507 -2.3948539 0.0166270 0.0292923
ENSG00000266738 MIR4757 MI0017398 hsa-mir-4757 1.046934e-01 0.6238721 0.8348589 0.7472785 0.4548955 0.5826483
ENSG00000266750 MIR4645 MI0017272 hsa-mir-4645 3.256034e+00 0.5885762 0.1766307 3.3322425 0.0008615 0.0017814
ENSG00000266751 MIR3661 MI0016062 hsa-mir-3661 9.870870e-02 0.3578900 0.9238675 0.3873824 0.6984731 0.8077970
ENSG00000266780 MIR4444-2 MI0016787 hsa-mir-4444-1 2.911395e-01 0.0749907 0.4240257 0.1768541 0.8596230 0.9080001
ENSG00000266780 MIR4444-2 MI0019111 hsa-mir-4444-2 2.911395e-01 0.0749907 0.4240257 0.1768541 0.8596230 0.9080001
ENSG00000267195 MIR212 MI0000288 hsa-mir-212 8.931464e+00 0.1650759 0.1349941 1.2228378 0.2213909 0.3168293
ENSG00000267200 MIR132 MI0000449 hsa-mir-132 5.219926e-01 0.6722484 0.3074534 2.1865051 0.0287787 0.0487639
ENSG00000267959 MIR3188 MI0014232 hsa-mir-3188 3.070066e-01 0.6087053 0.4313503 1.4111623 0.1581968 0.2339395
ENSG00000271886 MIR98 MI0000100 hsa-mir-98 5.126683e+00 0.1552302 0.1412741 1.0987868 0.2718611 0.3754230
ENSG00000272036 MIR139 MI0000261 hsa-mir-139 3.194065e+01 -1.2900171 0.1667085 -7.7381602 0.0000000 0.0000000
ENSG00000272080 MIR502 MI0003186 hsa-mir-502 2.674063e+01 -0.0378040 0.0925822 -0.4083284 0.6830326 0.7992807
ENSG00000272458 MIR432 MI0003133 hsa-mir-432 6.562413e+00 0.1912810 0.1234842 1.5490321 0.1213740 0.1839457
ENSG00000272543 MIR4787 MI0017434 hsa-mir-4787 1.181972e+00 1.5538414 0.2450093 6.3419681 0.0000000 0.0000000
ENSG00000198986 NA NA NA 5.341622e+02 -1.8176068 0.1424054 -12.7636086 0.0000000 0.0000000
ENSG00000199004 NA NA NA 1.689113e+04 -0.7449311 0.0956978 -7.7842036 0.0000000 0.0000000
ENSG00000199066 NA NA NA 2.193820e+01 1.0540479 0.0696376 15.1361830 0.0000000 0.0000000
ENSG00000199071 NA NA NA 2.844617e+03 0.7724094 0.0863927 8.9406807 0.0000000 0.0000000
ENSG00000199187 NA NA NA 1.807447e+01 1.0983874 0.1405014 7.8176268 0.0000000 0.0000000
ENSG00000207556 NA NA NA 5.458855e-01 0.8081179 0.2989785 2.7029299 0.0068731 0.0128509
ENSG00000207572 NA NA NA 3.819333e+00 -0.7408443 0.2153832 -3.4396571 0.0005825 0.0012147
ENSG00000207584 NA NA NA 4.679666e+00 3.9204494 0.2639834 14.8511204 0.0000000 0.0000000
ENSG00000207602 NA NA NA 3.011050e+02 -1.4364583 0.0632087 -22.7256321 0.0000000 0.0000000
ENSG00000207603 NA NA NA 1.734336e+01 1.1772774 0.1429539 8.2353650 0.0000000 0.0000000
ENSG00000207621 NA NA NA 2.249897e+03 3.9562663 0.1219464 32.4426752 0.0000000 0.0000000
ENSG00000207648 NA NA NA 9.308555e+03 -7.5332857 0.1180982 -63.7883097 0.0000000 0.0000000
ENSG00000207707 NA NA NA 1.459420e-01 -0.6455252 0.6602361 -0.9777189 0.3282134 0.4412345
ENSG00000207709 NA NA NA 1.652830e+01 1.0366823 0.0919660 11.2724500 0.0000000 0.0000000
ENSG00000207710 NA NA NA 1.107868e+01 1.3863799 0.1249901 11.0919150 0.0000000 0.0000000
ENSG00000207753 NA NA NA 2.404487e+02 4.8745438 0.1165014 41.8410816 0.0000000 0.0000000
ENSG00000207764 NA NA NA 1.135874e+01 0.2852896 0.2409949 1.1837996 0.2364924 0.3316330
ENSG00000207812 NA NA NA 2.241959e+01 -4.1861988 0.2511885 -16.6655653 0.0000000 0.0000000
ENSG00000207819 NA NA NA 2.562719e+00 -2.5525060 0.3167797 -8.0576682 0.0000000 0.0000000
ENSG00000207830 NA NA NA 1.606825e-01 -0.4163606 0.6077906 -0.6850394 0.4933190 0.6236779
ENSG00000207833 NA NA NA 5.672800e-02 0.1283532 1.1443235 0.1121652 0.9106924 NA
ENSG00000207834 NA NA NA 6.885590e-02 -0.1457301 1.0331530 -0.1410537 0.8878275 NA
ENSG00000207835 NA NA NA 2.249693e-01 -0.6459103 0.5838994 -1.1062013 0.2686394 0.3724319
ENSG00000207836 NA NA NA 1.454431e-01 -0.4609513 0.7795237 -0.5913243 0.5543031 0.6830806
ENSG00000207865 NA NA NA 6.701266e+01 -1.5092764 0.1078266 -13.9972543 0.0000000 0.0000000
ENSG00000207875 NA NA NA 1.257906e+03 -0.2976167 0.0542384 -5.4871935 0.0000000 0.0000001
ENSG00000207937 NA NA NA 3.623372e-01 -0.0315151 0.3970891 -0.0793653 0.9367421 0.9517337
ENSG00000207939 NA NA NA 7.809775e+01 1.5202006 0.1167350 13.0226655 0.0000000 0.0000000
ENSG00000207949 NA NA NA 3.871255e+01 -1.1211352 0.0798219 -14.0454515 0.0000000 0.0000000
ENSG00000207964 NA NA NA 8.992883e+00 0.9276515 0.1095870 8.4649799 0.0000000 0.0000000
ENSG00000208034 NA NA NA 9.874529e+02 -0.9416570 0.0607476 -15.5011472 0.0000000 0.0000000
ENSG00000208035 NA NA NA 3.522832e+02 2.4382314 0.0659548 36.9682078 0.0000000 0.0000000
ENSG00000211517 NA NA NA 2.071508e+01 -0.1572062 0.1293995 -1.2148909 0.2244077 0.3192739
ENSG00000211519 NA NA NA 1.307287e-01 0.2448977 0.8077624 0.3031804 0.7617524 0.8513365
ENSG00000215946 NA NA NA 1.737871e+00 0.3431676 0.2843906 1.2066770 0.2275566 0.3218771
ENSG00000215996 NA NA NA 7.384380e-02 -0.4096197 0.8973518 -0.4564762 0.6480476 NA
ENSG00000216133 NA NA NA 1.267814e+00 0.3451951 0.2517247 1.3713197 0.1702753 0.2487855
ENSG00000221011 NA NA NA 8.402710e-02 -0.2405204 1.0611988 -0.2266497 0.8206961 0.8802191
ENSG00000221027 NA NA NA 8.402710e-02 -0.2405204 1.0611988 -0.2266497 0.8206961 0.8802191
ENSG00000221035 NA NA NA 1.504472e+02 2.8372072 0.1416232 20.0334924 0.0000000 0.0000000
ENSG00000221062 NA NA NA 1.004316e+00 0.4530965 0.2746989 1.6494297 0.0990596 0.1524956
ENSG00000221147 NA NA NA 1.422468e+00 1.3254563 0.2252398 5.8846464 0.0000000 0.0000000
ENSG00000221181 NA NA NA 2.302840e-01 -0.1588231 0.5003705 -0.3174110 0.7509317 0.8448539
ENSG00000221366 NA NA NA 1.513153e-01 0.0091962 0.5899075 0.0155892 0.9875621 0.9895900
ENSG00000221391 NA NA NA 5.502308e+00 -0.5620369 0.2020520 -2.7816449 0.0054084 0.0102299
ENSG00000221419 NA NA NA 2.536630e-01 -0.7847944 0.6755422 -1.1617253 0.2453471 0.3420839
ENSG00000221423 NA NA NA 4.594115e+00 -0.4881924 0.2123108 -2.2994235 0.0214809 0.0373049
ENSG00000221542 NA NA NA 1.638410e-02 0.1507879 1.6289684 0.0925665 0.9262480 NA
ENSG00000221566 NA NA NA 1.092646e-01 0.2817269 0.7073876 0.3982639 0.6904357 0.8038601
ENSG00000221714 NA NA NA 8.402710e-02 -0.2405204 1.0611988 -0.2266497 0.8206961 0.8802191
ENSG00000221755 NA NA NA 2.849675e-01 -0.4880505 0.4596115 -1.0618763 0.2882918 0.3918842
ENSG00000221767 NA NA NA 8.807458e+01 -0.2582109 0.0683797 -3.7761341 0.0001593 0.0003501
ENSG00000221802 NA NA NA 7.639676e-01 1.0821995 0.2525954 4.2843199 0.0000183 0.0000443
ENSG00000222548 NA NA NA 1.121784e-01 0.6302771 0.7210832 0.8740698 0.3820802 0.5080522
ENSG00000222730 NA NA NA 7.950660e-02 -0.2699341 1.1125259 -0.2426318 0.8082907 0.8765463
ENSG00000238621 NA NA NA 5.171504e+00 0.5334218 0.1543755 3.4553518 0.0005496 0.0011510
ENSG00000238638 NA NA NA 2.196610e-01 -0.0280734 0.6155349 -0.0456082 0.9636226 0.9732307
ENSG00000238648 NA NA NA 5.127974e+00 0.5161347 0.1556714 3.3155391 0.0009147 0.0018676
ENSG00000238742 NA NA NA 8.902014e+00 -0.0514405 0.1054269 -0.4879259 0.6256023 0.7446194
ENSG00000239070 NA NA NA 2.143549e-01 -0.0591666 0.6321105 -0.0936016 0.9254256 0.9499149
ENSG00000239594 NA NA NA 2.525140e-01 1.2201297 0.5017702 2.4316502 0.0150302 0.0266718
ENSG00000239776 NA NA NA 4.411805e+01 0.0924130 0.1181739 0.7820086 0.4342095 0.5624459
ENSG00000241781 NA NA NA 4.395672e+01 0.5470219 0.1402165 3.9012662 0.0000957 0.0002152
ENSG00000251725 NA NA NA 1.022808e+01 1.3496469 0.1123944 12.0081303 0.0000000 0.0000000
ENSG00000251966 NA NA NA 1.143201e+00 -0.1249122 0.3829388 -0.3261935 0.7442779 0.8427091
ENSG00000252584 NA NA NA 1.926021e+00 -1.3413670 0.2420107 -5.5425947 0.0000000 0.0000001
ENSG00000263378 NA NA NA 5.178754e-01 0.7386806 0.3368459 2.1929335 0.0283122 0.0483089
ENSG00000263530 NA NA NA 1.419913e-01 -0.0598672 0.6238795 -0.0959595 0.9235527 0.9499149
ENSG00000263721 NA NA NA 2.913928e-01 0.0717984 0.4233058 0.1696136 0.8653140 0.9120372
ENSG00000263791 NA NA NA 1.411409e-01 0.3261816 0.6215301 0.5248041 0.5997194 0.7208450
ENSG00000263900 NA NA NA 4.547329e-01 -0.4573124 0.3644543 -1.2547868 0.2095562 0.3017946
ENSG00000263980 NA NA NA 2.804515e+00 0.7418748 0.2253426 3.2922079 0.0009940 0.0020128
ENSG00000264021 NA NA NA 4.772393e-01 0.1428407 0.3865493 0.3695277 0.7117345 0.8153202
ENSG00000264048 NA NA NA 6.949188e+00 3.5654486 0.2162364 16.4886625 0.0000000 0.0000000
ENSG00000264052 NA NA NA 1.469440e-01 0.1303521 0.8461351 0.1540559 0.8775657 0.9170279
ENSG00000264077 NA NA NA 5.170515e-01 -1.5644865 0.3371722 -4.6400219 0.0000035 0.0000088
ENSG00000264103 NA NA NA 2.096582e-01 1.0239565 0.5621118 1.8216244 0.0685120 0.1096192
ENSG00000264106 NA NA NA 8.402710e-02 -0.2405204 1.0611988 -0.2266497 0.8206961 0.8802191
ENSG00000264147 NA NA NA 4.389933e-01 1.6796135 0.4150203 4.0470637 0.0000519 0.0001183
ENSG00000264208 NA NA NA 2.380266e-01 0.0407380 0.3875371 0.1051204 0.9162803 0.9493520
ENSG00000264302 NA NA NA 8.776870e-02 0.5581882 0.9585118 0.5823488 0.5603317 0.6854904
ENSG00000264326 NA NA NA 9.293800e-02 0.2693262 0.8563749 0.3144957 0.7531446 0.8449070
ENSG00000264338 NA NA NA 1.267793e+01 -0.0668248 0.1630435 -0.4098589 0.6819094 0.7992807
ENSG00000264355 NA NA NA 3.416922e+01 0.1017277 0.1507155 0.6749652 0.4996979 0.6268704
ENSG00000264594 NA NA NA 7.956990e-02 0.5701406 0.9222713 0.6181918 0.5364489 0.6661249
ENSG00000264624 NA NA NA 4.964858e+01 0.0999517 0.1161640 0.8604363 0.3895486 0.5138060
ENSG00000264652 NA NA NA 2.171987e-01 0.9932846 0.4884084 2.0337175 0.0419801 0.0703996
ENSG00000264759 NA NA NA 1.080608e-01 -0.1737289 0.6366689 -0.2728717 0.7849518 0.8569497
ENSG00000264839 NA NA NA 2.090406e+00 -0.9826028 0.2277928 -4.3135815 0.0000161 0.0000390
ENSG00000264882 NA NA NA 6.781392e-01 -0.3873580 0.2937979 -1.3184504 0.1873529 0.2729200
ENSG00000264919 NA NA NA 1.277195e+00 3.0137915 0.2442762 12.3376395 0.0000000 0.0000000
ENSG00000264944 NA NA NA 4.437514e-01 0.9140987 0.4069842 2.2460301 0.0247021 0.0427469
ENSG00000265039 NA NA NA 7.699600e-02 0.0411229 1.0664959 0.0385589 0.9692421 0.9732307
ENSG00000265072 NA NA NA 2.896611e-01 -0.3801654 0.3956271 -0.9609186 0.3365931 0.4500204
ENSG00000265238 NA NA NA 2.090985e+00 -0.6426357 0.2006665 -3.2025067 0.0013624 0.0026808
ENSG00000265314 NA NA NA 2.001014e-01 -1.0230225 0.5712140 -1.7909620 0.0732994 0.1157861
ENSG00000265329 NA NA NA 2.097229e-01 0.2456501 0.6725038 0.3652768 0.7149048 0.8170340
ENSG00000265438 NA NA NA 1.358781e+00 -2.7639450 0.2713795 -10.1847955 0.0000000 0.0000000
ENSG00000265455 NA NA NA 1.318700e-01 0.0006456 0.6618905 0.0009753 0.9992218 0.9992218
ENSG00000265573 NA NA NA 1.378932e+00 3.3157191 0.2736621 12.1161061 0.0000000 0.0000000
ENSG00000265611 NA NA NA 8.945369e-01 1.0136285 0.2828143 3.5840778 0.0003383 0.0007272
ENSG00000265649 NA NA NA 6.666452e-01 0.0878854 0.2956414 0.2972702 0.7662602 0.8513365
ENSG00000265695 NA NA NA 1.611367e-01 0.7227289 0.6263963 1.1537886 0.2485869 0.3456136
ENSG00000265710 NA NA NA 3.332841e+01 3.1340151 0.1762896 17.7776507 0.0000000 0.0000000
ENSG00000265764 NA NA NA 1.298381e+00 1.0347142 0.2654753 3.8975907 0.0000972 0.0002175
ENSG00000265767 NA NA NA 6.601831e-01 1.7020853 0.3740886 4.5499527 0.0000054 0.0000134
ENSG00000265904 NA NA NA 1.655080e-01 -0.8170606 0.5322344 -1.5351519 0.1247465 0.1881642
ENSG00000265979 NA NA NA 4.193165e-01 1.3965368 0.6382979 2.1879078 0.0286763 0.0487597
ENSG00000266007 NA NA NA 3.073115e+00 -0.4311461 0.2074716 -2.0780975 0.0377004 0.0636602
ENSG00000266077 NA NA NA 4.504198e-01 -0.6437593 0.3423722 -1.8802906 0.0600685 0.0977353
ENSG00000266239 NA NA NA 5.675965e+00 0.2889717 0.1495171 1.9326993 0.0532733 0.0875332
ENSG00000266374 NA NA NA 1.003570e-01 -0.2362044 0.7347533 -0.3214744 0.7478509 0.8447945
ENSG00000266382 NA NA NA 1.120093e-01 0.5906851 0.9477278 0.6232645 0.5331108 0.6636685
ENSG00000266398 NA NA NA 1.206370e+00 3.0580017 0.3049681 10.0272836 0.0000000 0.0000000
ENSG00000266459 NA NA NA 6.738290e-02 -0.0579178 1.0336605 -0.0560317 0.9553165 NA
ENSG00000266620 NA NA NA 5.299013e-01 0.6060647 0.3232378 1.8749808 0.0607954 0.0985652
ENSG00000266636 NA NA NA 3.650095e-01 1.7613348 0.4809190 3.6624356 0.0002498 0.0005408
ENSG00000266638 NA NA NA 8.976900e+00 0.1661664 0.1813869 0.9160883 0.3596206 0.4794941
ENSG00000266700 NA NA NA 2.951355e-01 -0.3575184 0.4155235 -0.8604047 0.3895660 0.5138060
ENSG00000266715 NA NA NA 7.030520e-02 0.4364845 0.8944958 0.4879671 0.6255732 NA
ENSG00000266722 NA NA NA 4.331632e-01 -0.4205970 0.3616732 -1.1629200 0.2448620 0.3420839
ENSG00000266867 NA NA NA 3.125236e-01 1.1353738 0.5948978 1.9085191 0.0563242 0.0922355
ENSG00000266868 NA NA NA 4.049043e-01 -0.8225278 0.3705988 -2.2194560 0.0264557 0.0452996
ENSG00000271748 NA NA NA 5.565536e+01 2.4533753 0.1065223 23.0315720 0.0000000 0.0000000
ENSG00000272045 NA NA NA 7.440940e-02 0.3986946 0.8357994 0.4770219 0.6333465 NA
ENSG00000272213 NA NA NA 1.076207e+02 0.5824358 0.0671131 8.6784170 0.0000000 0.0000000
ENSG00000272278 NA NA NA 4.697601e+00 -0.0406036 0.2250837 -0.1803935 0.8568437 0.9070276
ENSG00000272291 NA NA NA 1.006683e-01 0.2183732 0.7752480 0.2816818 0.7781875 0.8544751
version <- checkMiRNAVersion(dge_hgnc$mirbase_id, verbose = TRUE)
##    Version Proportion           Recommend
## 1       v6      30.4%                    
## 2     v7_1     38.44%                    
## 3       v8     39.45%                    
## 4     v8_1     47.24%                    
## 5     v8_2     47.24%                    
## 6       v9     48.99%                    
## 7     v9_1     48.99%                    
## 8     v9_2     48.99%                    
## 9      v10     57.29%                    
## 10   v10_1     59.05%                    
## 11     v11     63.07%                    
## 12     v12     63.82%                    
## 13     v13     64.07%                    
## 14     v14     65.33%                    
## 15     v15     72.61%                    
## 16     v16     79.15%                    
## 17     v17      90.7%                    
## 18     v18     96.48%                    
## 19     v19     97.24%                    
## 20     v20     98.24%                    
## 21     v21     99.25%                    
## 22     v22      99.5%  ***BEST Matched***
# # Filter the acquired mirbase_ids to remove duplicates and use the mirBaseConvert
# (result1 <- miRNAVersionConvert(unique(na.omit(dge_hgnc$mirbase_id)),
#                               targetVersion = version,
#                               exact = TRUE))
# 
# (result2 <- miRNA_MatureToPrecursor(unique(na.omit(dge_hgnc$mirbase_id))))
# 
# (result3 <- checkMiRNAFamily(unique(dge_hgnc$mirbase_accession)))
# 
# (result4 <- getMiRNASequence(unique(dge_hgnc$mirbase_accession),
#                              targetVersion = version))
library(multiMiR)

# Plug miRNA's into multiMiR and getting validated targets
multimir_results <- get_multimir(org     = 'hsa',
                                 mirna   = unique(na.omit(dge_hgnc$mirbase_id)),
                                 table   = 'validated',
                                 summary = T)
## Searching mirecords ...
## Searching mirtarbase ...
## Searching tarbase ...
head(multimir_results@data)
##    database mature_mirna_acc mature_mirna_id target_symbol target_entrez
## 1 mirecords     MIMAT0000104     hsa-miR-107         BACE1         23621
## 2 mirecords     MIMAT0001536     hsa-miR-429          RERE           473
## 3 mirecords     MIMAT0001536     hsa-miR-429          RERE           473
## 4 mirecords     MIMAT0001536     hsa-miR-429          RERE           473
## 5 mirecords     MIMAT0000104     hsa-miR-107        SERBP1         26135
## 6 mirecords     MIMAT0000756     hsa-miR-326           SMO          6608
##    target_ensembl                              experiment support_type
## 1 ENSG00000186318               Luciferase activity assay             
## 2 ENSG00000142599                                                     
## 3 ENSG00000142599                                                     
## 4 ENSG00000142599                                                     
## 5 ENSG00000142864                                                     
## 6 ENSG00000128602 Western blot//Luciferase activity assay             
##   pubmed_id      type
## 1  18234899 validated
## 2  17923093 validated
## 3  17923093 validated
## 4  17923093 validated
## 5  17637574 validated
## 6  18756266 validated
library(clusterProfiler)

# Convert ENSEMBLID to ENTREZ
dge_entrez <- bitr(
  dge$id,
  fromType = "ENSEMBL",
  toType = c("ENTREZID"),
  OrgDb = org.Hs.eg.db::org.Hs.eg.db
) %>%
  rename(entrez = ENTREZID,
         id = ENSEMBL) %>%
  full_join(dge)

# Create geneList from the whole data set for GSEA
geneList_dge <- dge_entrez$log2FoldChange
names(geneList_dge) <- dge_entrez$entrez
geneList_dge <- sort(geneList_dge, decreasing = TRUE)
geneList_dge_no_dups <-
  geneList_dge[!duplicated(names(geneList_dge))]

bp_go <- groupGO(gene     = multimir_results@data$target_entrez,
               OrgDb    = org.Hs.eg.db::org.Hs.eg.db,
               ont      = "BP",
               level    = 3,
               readable = TRUE)

# mf_go <- groupGO(gene     = multimir_results@data$target_entrez,
#                OrgDb    = org.Hs.eg.db::org.Hs.eg.db,
#                ont      = "MF",
#                level    = 3,
#                readable = TRUE)
# 
# cc_go <- groupGO(gene     = multimir_results@data$target_entrez,
#                OrgDb    = org.Hs.eg.db::org.Hs.eg.db,
#                ont      = "CC",
#                level    = 3,
#                readable = TRUE)
# head(bp_go)
# 
# head(mf_go)

head(bp_go)
##                    ID                              Description Count GeneRatio
## GO:0019953 GO:0019953                      sexual reproduction  1059 1059/9454
## GO:0019954 GO:0019954                     asexual reproduction     0    0/9454
## GO:0022414 GO:0022414                     reproductive process  2083 2083/9454
## GO:0032504 GO:0032504      multicellular organism reproduction  1115 1115/9454
## GO:0032505 GO:0032505 reproduction of a single-celled organism     4    4/9454
## GO:0075325 GO:0075325                          spore dispersal     0    0/9454
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         geneID
## GO:0019953                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CRKL/ACOX1/ACVR2A/ADCYAP1R1/AKT1/AKT1/AKT1/ALDOA/ALDOA/ALDOA/ALDOA/AMH/APP/APP/APP/AR/AR/ATM/ATM/ATM/ATM/AVPR1A/AVPR1A/AVPR1A/AVPR1A/AVPR1A/AVPR1A/AXL/AXL/BCL2/BCL2/BCL2/BCL2/BCL2/BCL2L2/BCL6/BRCA2/CALR/CALR/CALR/CD9/CDK1/CDK1/SEPTIN7/CCR6/CREM/CRKL/CRKL/CRKL/CRKL/CRKL/CRKL/CRKL/CXADR/DDX3X/DDX3X/DDX3X/DDX3X/DDX3X/DDX6/DIAPH2/PHC2/ERCC1/EREG/FANCD2/FOXC1/FOXC1/FOLR1/MTOR/NR6A1/NR6A1/NR6A1/NR6A1/NR6A1/B4GALT1/GGT5/GLI1/H1-6/H2AX/H2AX/H2AX/H2AX/H3-3B/H3-3B/H3-3B/H3-3B/H3-3B/H3-3B/H3-3B/H3-3B/HMGB2/HOXA9/HOXA9/HOXA9/HOXA9/HOXA10/HOXA10/HOXA10/HOXA10/HOXA10/HOXA10/HOXA10/AGFG1/AGFG1/DNAJA1/DNAJA1/DNAJA1/DNAJA1/DNAJA1/DNAJA1/DNAJA1/IGF1/IGF1/IHH/KIT/SMAD4/SMAD4/SMAD4/SMAD4/SMAD4/SMAD5/SMAD5/SMAD5/SMAD5/CD46/CD46/MDK/MDK/MST1R/MYBL1/MYBL1/MYBL1/MYBL1/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/NOTCH1/ODF2/OVOL1/P2RY1/P2RY1/P2RY1/P2RY1/PAFAH1B1/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAX5/PAX5/PDE3A/PGM3/PGM3/PGM3/PLK1/PRKAG1/PRKAG1/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/RAD23B/KDM5A/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/RFX2/RFX2/RGS2/RPS6KB1/SBF1/SBF1/SIAH1/SIAH1/SKIL/SKIL/SKIL/SKIL/SKIL/SKIL/SKIL/SLC4A2/SLC4A2/SLC4A2/SLC4A2/SNRPA1/SNRPA1/SOX9/SPAM1/SPAM1/SRPK1/SSTR1/SSTR1/SSTR2/STAT3/STAT3/STAT3/AURKA/AURKA/AURKA/AURKA/STK11/STK11/TARBP2/TARBP2/TARBP2/TARBP2/TARBP2/TARBP2/THRA/THRA/THRA/UBB/UBE2B/UBE2B/UBE3A/UBE3A/UBE3A/VDAC2/EIF4H/EIF4H/EIF4H/EIF4H/WNT3/WNT3/WNT3/YY1/YY1/YY1/YY1/YY1/YY1/YY1/YY1/YY1/YY1/ZNF35/ZNF35/ZBTB16/ZNF148/ZNF148/BAG6/BAG6/BAG6/BAG6/BAG6/BAG6/BAG6/FOSL1/FOSL1/FOSL1/FOSL1/FOSL1/KMT2D/KMT2D/KMT2D/KMT2D/KMT2D/KMT2D/NRIP1/NRIP1/USP9X/USP9X/USP9X/AP3B1/AP3B1/SGPL1/SGPL1/CACNA1H/RNF8/PIWIL1/PIWIL1/QKI/QKI/QKI/QKI/QKI/TBPL1/TBPL1/TBPL1/TBPL1/TBPL1/TBPL1/CLOCK/PUM1/PUM1/PUM1/CEP57/UTP14C/HDAC4/SPATA2/SPATA2/SPATA2/SPATA2/SPATA2/UBAP2L/BCL2L11/BCL2L11/BCL2L11/BCL2L11/BCL2L11/BCL2L11/BCL2L11/BCL2L11/BCL2L11/ACTR1A/BCAP31/LHFPL2/FSTL3/CRTAP/CRTAP/CRTAP/CRTAP/CRTAP/UNC13B/CCT4/CELF1/CELF1/CELF1/CELF1/TOB2/TOB2/ABHD2/ABHD2/ABHD2/XRN2/PSME4/PSME4/PSME4/FBXW11/CTDNEP1/CTDNEP1/SIRT1/SIRT1/SIRT1/MAPK8IP2/PATZ1/PATZ1/NUP62/CADM1/CLIC4/CLIC4/CLIC4/PYGO1/PYGO1/DAZAP1/DAZAP1/AFF4/RACGAP1/RACGAP1/RACGAP1/SLC2A8/SPA17/SPATA6/SPATA6/SPATA6/SPATA6/SPATA6/SPATA6/LY6K/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/ALKBH5/ALKBH5/ZSCAN2/MNS1/WDR33/STRBP/STRBP/UBE2Q1/UBE2Q1/UBE2Q1/UBE2Q1/UBE2Q1/UBE2Q1/NDC1/ASH1L/CELF4/KNL1/PITHD1/PARP11/PARP11/ZMIZ1/ZMIZ1/METTL14/PLEKHA1/PLEKHA1/PLEKHA1/PLEKHA1/PLEKHA1/PROK2/FIGNL1/HERPUD2/HERPUD2/WDR77/WDR77/LIN28A/IMMP2L/KATNAL1/KATNAL1/KATNAL1/USP42/USP42/USP42/RHBDD1/SPIRE2/MCM8/PPP1R9B/FUT10/FUT10/FUT10/PAQR8/PAQR8/PYGO2/IGSF8/SPIN4/CTCFL/CTCFL/CTCFL/ODF4/RIMBP3C/FAM9B/FAM9C/AGO4/ZNF449/ZNF449/ZNF449/CFAP65/H2BC1/H2BC1/H2BC1/H2BC1/TMPRSS12/CFAP97D1/CFAP97D1/CFAP97D1/TMEM119/NANOS1/PTCHD3/PTCHD3/PTCHD3/PTCHD3/SHISA6/FSIP2/BCL2L11/ZFX/YBX2/YBX2/PAFAH1B1/PAFAH1B1/PAFAH1B1/PAFAH1B1/PAFAH1B1/MAPK8IP2/CD9/ERCC1/PGM3/NCAPH2/ARID4A/PIAS1/PIAS1/RAI14/FOXC1/FOXC1/ATP2B4/NDC1/NDC1/INTS13/DDX3Y/DDX3Y/PSME4/FSTL3/FSTL3/CSNK2A2/CSNK2A2/TRIP13/DAZAP1/DAZAP1/PRKACA/AFF4/AFF4/AFF4/AFF4/AFF4/FBXW11/TP63/KDM5A/KDM5A/KDM5A/KDM5A/HOXA9/HOXA9/HOXA9/HOXA9/HOXA9/ZCWPW1/ADCYAP1R1/DNM2/DNM2/SMARCA2/SMARCA2/NCOA1/ATRX/MAST2/MAST2/DNAJA1/DNAJA1/AURKA/XRN2/XRN2/DLD/TYRO3/AAAS/AAAS/MSH2/MSH2/MSH2/SRPK1/SRPK1/SIRT1/SIRT1/SIRT1/CRKL/CRKL/CRKL/CRKL/SBF1/YY1/YY1/PABPC1L/TCFL5/TCFL5/E2F1/E2F1/E2F1/CELF4/CDK16/CDK16/CDK16/CDK16/CDK16/KATNAL1/KATNAL1/KATNAL1/SPAG1/UBXN8/ASF1B/ASF1B/RAB3A/USP42/USP42/USP42/EIF4H/SPIN1/SPIN1/SPIN1/TGFBR1/TGFBR1/SETX/SETX/SETX/PLEKHA1/PLEKHA1/ZMIZ1/RAD51C/SEPTIN4/PPP1R9B/PRKAR1A/PRKAR1A/PRKAR1A/IFT20/ZBTB16/FOLR1/PANX1/DDX6/DDX6/DDX6/DDX6/DDX6/MDK/STX2/STX2/STX2/FBXO5/FBXO5/RNF8/QKI/QKI/QKI/QKI/TBP/TBP/TTK/GNPDA1/GNPDA1/GNPDA1/SMAD5/SMAD5/SMAD5/UBE3A/UBE3A/UBE3A/FANCL/CCT4/CCT4/KDM3A/GORASP2/GORASP2/GORASP2/GORASP2/SOS1/ASH1L/ASH1L/ASH1L/ASH1L/ASH1L/ASH1L/ASH1L/LEPR/TSNAX/KDM5B/KDM5B/KDM5B/KDM5B/KDM5B/CD46/PMFBP1/ARMC2/CCNI/CCNI/UBE2B/RAD23B/RAD23B/RAD23B/RAD23B/MLH3/TCP1/TCP1/TCP1/PAIP2/PAIP2/PAIP2/PAIP2/PTK2B/RNF2/KIF18A/KIF18A/SEPTIN7/SEPTIN7/HERPUD2/INHBA/INHBA/PRDX4/TNFAIP6/PI3/SEMG1/SEMG1/USP9X/USP9X/USP9X/USP9X/H1-1/MEA1/BBS2/HROB/BMP4/SOX9/SOX9/MKKS/MCM8/MCM8/EIF2S2/TUBGCP3/THRA/THRA/HSPA2/TSPAN8/CCDC136/HOXD10/HOXD10/HOXD10/BCL2L2/BCL2L2/BCL2L2/BCL2L2/BCL2L2/NECTIN2/SYNE1/TOP2A/TOP2A/TOP2A/TOP2A/SNRPA1/BRME1/FIGNL1/FIGNL1/H3-3B/H3-3B/AP3B1/CCNA1/ARNTL/CCNB1/FST/FST/PUM1/PUM1/PUM1/SPOCD1/SPOCD1/AGO4/AGO4/AGO4/AGO4/HOOK1/HOOK1/HOOK1/TUT4/CLOCK/CLOCK/CLOCK/CLOCK/DZIP1/DZIP1/DZIP1/B4GALNT1/CCT7/CCT7/SERPINE2/SERPINE2/SERPINE2/BRIP1/BRIP1/SKIL/SKIL/WDR33/ODF2/SLC2A8/RPS6/RPS6/RPS6/RPS6/KNL1/KNL1/KNL1/PAQR5/ADAM10/ADAM10/ADAM10/ADAM10/ADAM10/ADCY3/ADCY3/MNS1/BMPR1B/ETV6/ETV6/LGR5/TARBP2/BRCA2/SSTR1/ADAM21/BBS4/ABHD2/ABHD2/MFGE8/CEP131/SMAD4/SMAD4/SMAD4/APP/APP/AKT1/AKT1/AKT1/UBAP2L/UBAP2L/UBAP2L/UBAP2L/UBAP2L/NPHP1/SPAG16/RHBDD1/FANCD2/FANCD2/TMF1/TMF1/LHFPL2/LHFPL2/LHFPL2/LHFPL2/NR6A1/NR6A1/GAS2/GAS2/CELF1/CELF1/CELF1/CELF1/CELF1/CELF1/CELF1/CELF1/CELF1/CELF1/CELF1/CELF1/ALDOA/ALDOA/THRB/THRB/TRIM36/GJA1/GJA1/GJA1/CDYL/BCL2L11/BCL2L11/BCL2L11/BCL2L11/CLGN/CXADR/CXADR/CXADR/ADAMTS1/ADAMTS1/ADAMTS1/ADAMTS1/ADAMTS1/ADAMTS1/CCT8/CCT8/CCNB2/FANCC/CDC25C/SPATA2/SPATA2/SPATA2/SPTBN4/ACOX1/RACGAP1/RACGAP1/RACGAP1/RACGAP1/RACGAP1/INHBB/INHBB/NPPC/PYGO2/PYGO2/CCT3/EIF5A2/EIF5A2/EIF5A2/PTX3/PTX3/ZNF148/ZNF148/ZNF148/RPL39L/SFMBT1/SFMBT1/HMGB2/HPGD/HPGD/PRDM9/PTTG1/SUN1/SUN1/SUN1/SLC4A2/SLC4A2/WASHC5/PRSS37/STRBP/STRBP/STRBP/VDAC2/CEP57/CEP57/SGPL1/SGPL1/SGPL1/IFTAP/MARF1/PLK1/KMT2D/KMT2D/KMT2D/KMT2D/KMT2D/KMT2D/AXL/AXL/AXL/PAFAH1B2/PAFAH1B2/PAFAH1B2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/STAT3/CLIC4/BNC1/P2RY1/ZNF35/CRTAP/CDK1/CDK1/CDK1/SMAD1/PAQR8/PAQR8/BCL2/BCL2/BCL2/BCL2/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PRND/PRND/PDE3A/OVOL1/SLC2A14/ADGRG2/AGFG1/AGFG1/FOSL1/DEAF1/SIX5/NR2C2/NHLH2/NECTIN3/NECTIN3/NECTIN3/CALR/CALR/CALR/PLD6/TH/TDRP/NRIP1/NRIP1/OXTR/TDRKH/LIMK2/TMEM95/CADM1/TMEM119/TOB2/TOB2/SPATA32/JAG2/NR2F2/NR2F2/MYBL1/MYBL1/SPIN4/H1-6/FANCA/H2AX/H2AX/H2AX/CFAP54/NANOS1/SYCP2/TDRD7/SIAH1/IGF2R/IGF2R/IGF2R/SRC/TXNRD3/TXNRD3/MEIG1/YTHDF2/YTHDF2/YTHDF2/UNC13B/UNC13B/MTOR/UBE2J1/UBE2J1/UBE2J1/BRD2/BRD2/BRD2/BRD2/BRD2/BRD2/TRIM27/LGR4/LGR4/LGR4/LGR4/ANG/DDX3X/DDX3X/DDX3X/DDX3X/DDX3X/DDX3X/FANCG/SLC26A6/KIFC1/ETV5/INSL3/HOXA10/GGNBP2/CD9
## GO:0019954                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
## GO:0022414 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                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           LIF/CRKL/ACOX1/ACVR2A/ADCYAP1R1/AKT1/AKT1/AKT1/AMH/APP/APP/APP/AR/AR/ATM/ATM/ATM/ATM/AVPR1A/AVPR1A/AVPR1A/AVPR1A/AVPR1A/AVPR1A/AXL/AXL/BCL2/BCL2/BCL2/BCL2/BCL2/BCL2L2/BCL6/BRCA2/BSG/CALR/CALR/CALR/CASP2/CASP2/CASP3/CASP3/CASP3/CD9/SEPTIN7/CCR6/CREM/CRKL/CRKL/CRKL/CRKL/CRKL/CRKL/CRKL/CXADR/CYP1A1/DDX3X/DDX3X/DDX3X/DDX3X/DDX3X/DDX6/DIAPH2/DSG2/PHC2/ERCC1/EREG/ETS1/ETS1/ETS1/ETS1/ETS1/ETS1/ETS1/FANCD2/ACSL4/ACSL4/FOXC1/FOXC1/FOLR1/MTOR/GABRB1/GABRB1/GABRB1/NR6A1/NR6A1/NR6A1/NR6A1/NR6A1/B4GALT1/GGT5/GJB2/GLI1/H1-6/H2AX/H2AX/H2AX/H2AX/H3-3B/H3-3B/H3-3B/H3-3B/H3-3B/H3-3B/H3-3B/H3-3B/HAS2/HAS2/HAS2/HMGB2/HOXA9/HOXA9/HOXA9/HOXA9/HOXA10/HOXA10/HOXA10/HOXA10/HOXA10/HOXA10/HOXA10/AGFG1/AGFG1/DNAJA1/DNAJA1/DNAJA1/DNAJA1/DNAJA1/DNAJA1/DNAJA1/IGF1/IGF1/IHH/ITGA3/ITGA3/KIT/LIF/LIF/SMAD4/SMAD4/SMAD4/SMAD4/SMAD4/SMAD5/SMAD5/SMAD5/SMAD5/MDK/MDK/MMP7/MYBL1/MYBL1/MYBL1/MYBL1/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/NOTCH1/ODF2/OPRM1/OVOL1/P2RY1/P2RY1/P2RY1/P2RY1/PAFAH1B1/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAFAH1B2/PAX5/PAX5/PCNA/PCNA/PCNA/PDE3A/PGM3/PGM3/PGM3/PLK1/PRKAG1/PRKAG1/MAPK1/MAPK1/MAPK1/MAPK1/MAPK1/MAPK3/MAP2K6/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/RAD23B/KDM5A/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/TRIM27/RFX2/RFX2/RGS2/RPS6KB1/SBF1/SBF1/SIAH1/SIAH1/SKIL/SKIL/SKIL/SKIL/SKIL/SKIL/SKIL/SLC4A2/SLC4A2/SLC4A2/SLC4A2/SLIT3/SLIT3/SNRPA1/SNRPA1/SOX9/SPAM1/SPAM1/SRPK1/SSTR1/SSTR1/SSTR2/AURKA/AURKA/AURKA/AURKA/STK11/STK11/TARBP2/TARBP2/TARBP2/TARBP2/TARBP2/TARBP2/TGFB2/TGFB2/TGFB2/THRA/THRA/THRA/UBB/UBE2B/UBE2B/VDR/WNT3/WNT3/WNT3/YY1/YY1/YY1/YY1/YY1/YY1/YY1/YY1/YY1/YY1/ZNF35/ZNF35/ZBTB16/ZNF148/ZNF148/BAG6/BAG6/BAG6/BAG6/BAG6/BAG6/BAG6/FOSL1/FOSL1/FOSL1/FOSL1/FOSL1/KMT2D/KMT2D/KMT2D/KMT2D/KMT2D/KMT2D/NRIP1/NRIP1/USP9X/USP9X/USP9X/FZD4/AP3B1/AP3B1/STC2/STC2/STC2/SGPL1/SGPL1/MBD2/MBD2/MBD2/MBD2/MBD2/RNF8/PIWIL1/PIWIL1/QKI/QKI/QKI/QKI/QKI/TBPL1/TBPL1/TBPL1/TBPL1/TBPL1/TBPL1/CLOCK/NCOR2/NCOR2/PUM1/PUM1/PUM1/CEP57/UTP14C/HDAC4/SPATA2/SPATA2/SPATA2/SPATA2/SPATA2/BCL2L11/BCL2L11/BCL2L11/BCL2L11/BCL2L11/BCL2L11/BCL2L11/BCL2L11/BCL2L11/ACTR1A/BCAP31/FSTL3/CRTAP/CRTAP/CRTAP/CRTAP/CRTAP/CELF1/CELF1/CELF1/CELF1/TOB2/TOB2/PRDX3/TMED2/ABHD2/ABHD2/ABHD2/XRN2/PSME4/PSME4/PSME4/FBXW11/CTDNEP1/CTDNEP1/SIRT1/SIRT1/SIRT1/MAPK8IP2/PATZ1/PATZ1/KPNA6/KPNA6/KPNA6/KPNA6/KPNA6/KPNA6/NUP62/CADM1/PYGO1/PYGO1/DAZAP1/DAZAP1/AFF4/RACGAP1/RACGAP1/RACGAP1/SLC2A8/SPA17/SPATA6/SPATA6/SPATA6/SPATA6/SPATA6/SPATA6/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/PAQR5/ALKBH5/ALKBH5/ZSCAN2/MNS1/WDR33/STRBP/STRBP/UBE2Q1/UBE2Q1/UBE2Q1/UBE2Q1/UBE2Q1/UBE2Q1/NDC1/ASH1L/CELF4/STOX2/STOX2/STOX2/KNL1/PITHD1/PARP11/PARP11/ZMIZ1/ZMIZ1/METTL14/PLEKHA1/PLEKHA1/PLEKHA1/PLEKHA1/PLEKHA1/PROK2/FIGNL1/HERPUD2/HERPUD2/WDR77/WDR77/LIN28A/IMMP2L/KATNAL1/KATNAL1/KATNAL1/USP42/USP42/USP42/RHBDD1/SPIRE2/MCM8/PPP1R9B/PAQR8/PAQR8/PYGO2/SPIN4/CTCFL/CTCFL/CTCFL/ODF4/RIMBP3C/TCF23/FAM9B/FAM9C/AGO4/ZNF449/ZNF449/ZNF449/CFAP65/H2BC1/H2BC1/H2BC1/H2BC1/CFAP97D1/CFAP97D1/CFAP97D1/TMEM119/NANOS1/PTCHD3/PTCHD3/PTCHD3/PTCHD3/SHISA6/FSIP2/BCL2L11/ZFX/YBX2/YBX2/PAFAH1B1/PAFAH1B1/PAFAH1B1/PAFAH1B1/PAFAH1B1/MAPK8IP2/CD9/ERCC1/PGM3/NCAPH2/KPNA6/KPNA6/ARID4A/PIAS1/PIAS1/RAI14/HSPA5/HSPA5/PTPRN/FOXC1/FOXC1/ATP2B4/NDC1/NDC1/DDX3Y/DDX3Y/ACSL4/ACSL4/ACSL4/ACSL4/ACSL4/PSME4/FSTL3/FSTL3/CSNK2A2/CSNK2A2/TRIP13/DAZAP1/DAZAP1/PRKACA/AFF4/AFF4/AFF4/AFF4/AFF4/FBXW11/TP63/KDM5A/KDM5A/KDM5A/KDM5A/UBE2A/HOXA9/HOXA9/HOXA9/HOXA9/HOXA9/EDN1/EDN1/ZCWPW1/ADCYAP1R1/DNM2/DNM2/SMARCA2/SMARCA2/NCOA1/ATRX/MAST2/MAST2/DNAJA1/DNAJA1/TMED2/TMED2/AURKA/XRN2/XRN2/DLD/TYRO3/TGFB2/TGFB2/MSH2/MSH2/MSH2/SRPK1/SRPK1/SIRT1/SIRT1/SIRT1/CRKL/CRKL/CRKL/CRKL/MAPK1/MAPK1/MAPK1/SBF1/YY1/YY1/PABPC1L/TCFL5/TCFL5/E2F1/E2F1/E2F1/CELF4/CDK16/CDK16/CDK16/CDK16/CDK16/KATNAL1/KATNAL1/KATNAL1/MAPK3/TLE6/ASF1B/ASF1B/CASP2/CASP2/CASP2/USP42/USP42/USP42/SPIN1/SPIN1/SPIN1/TGFBR1/TGFBR1/SETX/SETX/SETX/PLEKHA1/PLEKHA1/ZMIZ1/RAD51C/SEPTIN4/PPP1R9B/PRKAR1A/PRKAR1A/PRKAR1A/IFT20/ZBTB16/FOLR1/PANX1/DDX6/DDX6/DDX6/DDX6/DDX6/MDK/FBXO5/FBXO5/PPARD/RNF8/QKI/QKI/QKI/QKI/TBP/TBP/TTK/SMAD5/SMAD5/SMAD5/STC2/FANCL/KDM3A/GORASP2/GORASP2/GORASP2/GORASP2/SOS1/ASH1L/ASH1L/ASH1L/ASH1L/ASH1L/ASH1L/ASH1L/TSNAX/PMFBP1/ARMC2/CCNI/CCNI/UBE2B/RAD23B/RAD23B/RAD23B/RAD23B/MLH3/PAIP2/PAIP2/PAIP2/PAIP2/EGR1/EGR1/EGR1/EGR1/EGR1/EGR1/EGR1/PTK2B/ADCY7/RNF2/KIF18A/KIF18A/SEPTIN7/SEPTIN7/HERPUD2/INHBA/INHBA/PRDX4/TNFAIP6/SEMG1/SEMG1/USP9X/USP9X/USP9X/USP9X/H1-1/MEA1/BBS2/HROB/BMP4/SOX9/SOX9/MED1/MED1/MKKS/MCM8/MCM8/EIF2S2/THRA/THRA/HSPA2/TSPAN8/LIF/LIF/LIF/LIF/CCDC136/BCL2L2/BCL2L2/BCL2L2/BCL2L2/BCL2L2/NECTIN2/SYNE1/TOP2A/TOP2A/TOP2A/TOP2A/SNRPA1/BRME1/FIGNL1/FIGNL1/H3-3B/H3-3B/PCNA/AP3B1/CCNA1/ARNTL/MBD2/CCNB1/FST/FST/PUM1/PUM1/PUM1/SPOCD1/SPOCD1/AGO4/AGO4/AGO4/AGO4/HOOK1/HOOK1/HOOK1/TUT4/CLOCK/CLOCK/CLOCK/CLOCK/PDGFRA/DZIP1/DZIP1/DZIP1/ETS1/B4GALNT1/SERPINE2/SERPINE2/SERPINE2/BRIP1/BRIP1/SKIL/SKIL/WDR33/ODF2/SLC2A8/RPS6/RPS6/RPS6/RPS6/MMP7/MMP7/KNL1/KNL1/KNL1/PAQR5/ADAM10/ADAM10/ADAM10/ADAM10/ADAM10/MNS1/BMPR1B/ETV6/ETV6/LGR5/TARBP2/BRCA2/SSTR1/BBS4/ABHD2/ABHD2/ARRB2/CEP131/SMAD4/SMAD4/SMAD4/APP/APP/AKT1/AKT1/AKT1/NPHP1/SPAG16/RHBDD1/FANCD2/FANCD2/TMF1/TMF1/SLIT2/PAM/PAM/PAM/PAM/EGFR/EGFR/NR6A1/NR6A1/GAS2/GAS2/CELF1/CELF1/CELF1/CELF1/CELF1/CELF1/CELF1/CELF1/CELF1/CELF1/CELF1/CELF1/THRB/THRB/GJA1/GJA1/GJA1/CDYL/BCL2L11/BCL2L11/BCL2L11/BCL2L11/CXADR/CXADR/CXADR/ADAMTS1/ADAMTS1/ADAMTS1/ADAMTS1/ADAMTS1/ADAMTS1/TIMP4/CCNB2/FANCC/CDC25C/SPATA2/SPATA2/SPATA2/STC1/TPPP3/ACOX1/RACGAP1/RACGAP1/RACGAP1/RACGAP1/RACGAP1/INHBB/INHBB/NPPC/GABRB1/PYGO2/PYGO2/EIF5A2/EIF5A2/EIF5A2/PTX3/PTX3/ZNF148/ZNF148/ZNF148/RPL39L/SFMBT1/SFMBT1/HMGB2/HPGD/HPGD/PRDM9/CASP3/CASP3/CASP3/CASP3/PTTG1/SUN1/SUN1/SUN1/SLC4A2/SLC4A2/WASHC5/STRBP/STRBP/STRBP/PRDX3/PRDX3/CEP57/CEP57/SGPL1/SGPL1/SGPL1/IFTAP/MARF1/PLK1/KMT2D/KMT2D/KMT2D/KMT2D/KMT2D/KMT2D/AXL/AXL/AXL/PAFAH1B2/PAFAH1B2/PAFAH1B2/SEPTIN2/SEPTIN2/SEPTIN2/SEPTIN2/BNC1/P2RY1/ZNF35/CRTAP/SMAD1/PAQR8/PAQR8/HAS2/HAS2/BCL2/BCL2/BCL2/BCL2/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/PTEN/BSG/BSG/BSG/PDE3A/OVOL1/SP3/SP3/SP3/SLC2A14/ADGRG2/AGFG1/AGFG1/FZD4/FZD4/FOSL1/DEAF1/SIX5/NR2C2/NHLH2/NECTIN3/NECTIN3/NECTIN3/CALR/CALR/CALR/PTPN11/PLD6/TH/TDRP/NRIP1/NRIP1/OXTR/TDRKH/LIMK2/TMEM95/CADM1/TMEM119/TOB2/TOB2/SLIT3/SPATA32/JAG2/ROBO2/ROBO2/NR2F2/NR2F2/MYBL1/MYBL1/SPIN4/EPOR/EPOR/H1-6/FANCA/H2AX/H2AX/H2AX/CFAP54/NANOS1/SYCP2/TDRD7/SIAH1/NCOR2/IGF2R/IGF2R/IGF2R/SRC/TXNRD3/TXNRD3/MEIG1/YTHDF2/YTHDF2/YTHDF2/MTOR/UBE2J1/UBE2J1/UBE2J1/BMPR2/BMPR2/BMPR2/BMPR2/BMPR2/BRD2/BRD2/BRD2/BRD2/BRD2/BRD2/TRIM27/LGR4/LGR4/LGR4/LGR4/ANG/DDX3X/DDX3X/DDX3X/DDX3X/DDX3X/DDX3X/FANCG/SLC26A6/KIFC1/ETV5/INSL3/HOXA10/GGNBP2/CD9
## GO:0032505                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ZNF445/ZNF445/ZNF445/ZNF445
## GO:0075325
# Convert ENSEMBLID to ENTREZ
dge_entrez <- bitr(
  dge$id,
  fromType = "ENSEMBL",
  toType = c("ENTREZID"),
  OrgDb = org.Hs.eg.db::org.Hs.eg.db
) %>%
  rename(entrez = ENTREZID,
         id = ENSEMBL) %>%
  full_join(dge)

# Create geneList from the whole data set for GSEA
geneList_dge <- dge_entrez$log2FoldChange
names(geneList_dge) <- dge_entrez$entrez
geneList_dge <- sort(geneList_dge, decreasing = TRUE)
geneList_dge_no_dups <-
  geneList_dge[!duplicated(names(geneList_dge))]

# After removing duplicates set seed for reproducibility
the_seed = 1623250700 %% 100000 # 50700

# set the same seed for the following analysis using the GSEA algorithm
# GENE ONTOLOGY
set.seed(the_seed)
go_ora <- enrichGO(gene         = multimir_results@data$target_entrez,
                OrgDb         = org.Hs.eg.db::org.Hs.eg.db,
                ont           = "ALL",
                pAdjustMethod = "BH",
                pvalueCutoff  = 1,
                qvalueCutoff  = 1)
head(go_ora)
##            ONTOLOGY         ID                              Description
## GO:0010498       BP GO:0010498    proteasomal protein catabolic process
## GO:0016569       BP GO:0016569          covalent chromatin modification
## GO:0016570       BP GO:0016570                     histone modification
## GO:0010256       BP GO:0010256         endomembrane system organization
## GO:0042176       BP GO:0042176  regulation of protein catabolic process
## GO:0009896       BP GO:0009896 positive regulation of catabolic process
##            GeneRatio   BgRatio       pvalue     p.adjust       qvalue
## GO:0010498  329/8733 483/18862 9.671280e-23 6.134493e-19 3.816593e-19
## GO:0016569  314/8733 461/18862 9.408263e-22 2.983831e-18 1.856399e-18
## GO:0016570  306/8733 448/18862 1.602237e-21 3.362990e-18 2.092294e-18
## GO:0010256  325/8733 482/18862 2.262864e-21 3.362990e-18 2.092294e-18
## GO:0042176  268/8733 383/18862 2.650946e-21 3.362990e-18 2.092294e-18
## GO:0009896  305/8733 450/18862 1.174538e-20 1.241682e-17 7.725160e-18
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      geneID
## GO:0010498                  27252/207/267/819/857/899/983/996/997/1017/1191/1452/1454/1499/1601/2272/2295/2629/2768/2932/3077/3303/3304/3326/4092/4189/4193/4287/5071/5094/5310/5347/5366/5516/5527/5683/5684/5694/5698/5707/5709/5715/5717/5720/5887/6047/6386/6477/6478/6500/6613/6790/6880/6923/7126/7184/7314/7320/7321/7323/7326/7328/7336/7341/7917/8065/8405/8450/8453/8473/8667/8945/8975/9024/9097/9112/9184/9354/9529/9575/9655/9683/9695/9709/9810/9928/10075/10134/10193/10221/10299/10444/10755/11011/11160/23198/23291/23321/23376/23411/23429/25820/25827/26232/26234/26259/27338/27351/29997/51343/51434/54431/54442/54476/54994/55284/55294/55432/55658/55666/55757/55829/55968/57095/57520/57531/57542/57761/57805/64682/64844/79016/79018/79654/79699/79718/79791/80011/80020/80267/80311/80344/81502/83590/83737/83892/84236/84301/84961/91147/91445/91544/93611/115290/116224/127544/130507/144165/146330/149603/153090/153769/154214/165324/222235/255488/282679/283514/339745/387921/474383/474384/493829/57414/5689/29954/5704/9604/25937/8554/25897/8452/3309/23327/51528/5601/4734/6400/28951/5566/55743/7319/369/27074/3093/4983/9817/57092/7514/10296/25831/117584/8697/51322/5714/54620/9978/5700/5693/5687/6907/5713/51283/7993/6449/2931/10613/6468/57003/64750/7466/27339/25906/329/8078/4121/26271/9532/23197/25852/4780/991/9870/7706/11059/9491/9572/5682/863/348/10197/116988/406/79845/891/29979/10956/55270/79139/160418/8451/5371/409/1453/51529/6135/23190/7110/10769/64777/210/7316/9781/64795/7345/29761/701/130617/65018/9992/5692/56893/84447/201595/25898/79982/4085/9232/7415/9147/3429/4130/26263/80700/1642/55872/92305/9306/11236/8507/80176/10869/6599/1263/200933/11065/92369/5708/29882/10425/9212/5886/81858/122809/23510/91304/23194/7327/5719/7874/29978/5718/57162/10210/54557/23607/258010/6815/11060/57154/51465/26046/5696/10399/554251/131405/7844/51608/641700
## GO:0016569                                                                                                 3976/8314/472/604/675/890/983/1017/1105/1111/1387/1499/1786/1789/1810/2005/2033/2145/2146/2624/2641/3009/3141/3481/3619/3717/3720/4089/4204/4221/4297/4302/4524/4602/4654/5079/5187/5252/5563/5578/5579/5587/5595/5599/5896/5927/5978/6018/6418/6497/6500/6720/6790/6839/6871/6878/6879/6880/6883/6885/7157/7291/7320/7334/7422/7862/8085/8089/8091/8242/8295/8450/8473/8726/8932/8986/9025/9112/9252/9575/9643/9647/9678/9739/9757/9759/9810/9869/9913/10075/10155/10269/10270/10336/10419/10498/10782/10847/10856/10891/10943/11108/11143/11176/11177/23067/23133/23135/23170/23272/23326/23338/23376/23410/23411/23429/23512/23558/23741/25836/25855/25865/26009/26036/26122/26147/26155/28989/29104/29943/51043/51105/51111/51147/51230/53615/54107/54880/54904/55167/55183/55196/55209/55352/55611/55729/55870/56254/56950/56970/57332/57602/57708/63976/64324/64769/78990/79447/79577/79718/79829/79831/80218/80312/80854/84312/84333/84656/90780/91748/94104/140690/150572/165918/171023/200186/200424/201163/221037/284058/387893/100170841/55904/80853/9031/5536/672/5926/9734/58508/9474/23210/54556/79960/7319/7994/8648/546/4504/23186/51322/27154/54620/23774/7443/55257/6907/9767/10664/2138/51366/84444/2091/23081/2625/4591/6830/7468/64426/9555/8850/55683/55818/3065/6421/11240/10765/5929/55758/3070/56943/80314/6045/79903/5585/8202/9329/3553/23030/8520/5562/84787/891/51535/1643/27097/3662/23168/51176/54934/7786/122953/9960/23476/22823/151050/9730/6622/7403/6877/57325/9219/9320/10600/84108/23522/2140/65018/1487/3275/26097/56916/6314/151636/55689/80335/56979/25862/322/5245/1642/648/55806/54790/25942/195814/8841/3054/93624/51504/22992/83903/55929/9212/79813/29072/57634/84193/7404/10933/55693/4674/7874/340602/10445/339287/11091/5253/221477/9646/55170/10626/10432/7703
## GO:0016570                                                                                                                                              3976/8314/472/604/675/890/983/1017/1111/1387/1499/1786/1789/1810/2005/2033/2145/2146/2624/2641/3009/3141/3481/3619/3717/3720/4089/4204/4221/4297/4302/4524/4602/4654/5079/5187/5252/5563/5578/5579/5587/5595/5599/5896/5927/5978/6018/6418/6497/6500/6720/6790/6839/6871/6878/6879/6880/6883/6885/7157/7291/7320/7334/7422/7862/8085/8089/8091/8242/8295/8450/8473/8726/8986/9025/9112/9252/9575/9643/9647/9678/9739/9757/9759/9810/9869/9913/10075/10269/10270/10336/10419/10498/10782/10847/10856/10891/10943/11108/11143/11176/11177/23067/23133/23135/23170/23326/23338/23376/23410/23411/23429/23512/23558/23741/25836/25855/25865/26009/26036/26122/26147/26155/28989/29104/29943/51043/51105/51111/51147/51230/53615/54107/54880/54904/55167/55183/55209/55352/55611/55870/56254/56950/56970/57332/57602/57708/63976/64324/64769/78990/79447/79577/79718/79829/79831/80218/80312/80854/84312/84333/84656/90780/91748/94104/140690/150572/165918/171023/200186/200424/201163/221037/284058/387893/100170841/55904/80853/9031/5536/672/5926/9734/58508/9474/23210/54556/79960/7319/7994/8648/546/4504/23186/51322/27154/54620/23774/7443/55257/6907/9767/10664/2138/51366/84444/2091/23081/2625/4591/6830/7468/64426/9555/8850/55683/55818/3065/6421/11240/10765/5929/55758/56943/80314/6045/79903/5585/8202/9329/3553/23030/8520/5562/84787/891/1643/27097/3662/23168/51176/54934/7786/122953/9960/23476/22823/151050/9730/6622/7403/6877/57325/9219/9320/10600/84108/23522/2140/65018/1487/3275/26097/56916/6314/151636/55689/80335/56979/25862/322/5245/1642/648/55806/54790/25942/195814/8841/3054/93624/51504/22992/83903/55929/9212/79813/29072/57634/84193/7404/10933/55693/4674/7874/340602/10445/339287/11091/5253/221477/9646/55170/10626/10432/7703
## GO:0010256 208/207/309/367/488/738/745/857/858/950/983/998/1182/1191/1289/1385/1452/1760/2149/2801/2852/3064/4627/5027/5048/5071/5205/5347/5359/5515/5578/5579/5587/5594/5595/5604/5728/5862/5869/5990/6456/6521/6708/6810/6836/6860/7042/7357/7534/7879/7905/7917/8027/8266/8546/8615/8675/8976/9002/9066/9144/9145/9146/9321/9368/9519/9529/9631/9659/9712/9919/10015/10075/10087/10162/10228/10269/10313/10328/10397/10419/10494/10564/10890/10959/10960/11196/11252/22796/22872/23136/23204/23271/23332/23344/23399/23435/23603/25777/25923/25946/26092/26259/27183/27230/27314/27348/29927/29993/30845/30846/50636/50999/51014/51100/51160/51429/51534/51652/53947/54828/54874/54943/55048/55353/55654/55666/55831/55909/55968/55971/56851/57082/57097/57132/57142/57403/57488/57531/57617/64145/64225/64398/64598/79628/79720/80346/81562/81671/84067/84376/91754/93099/93380/93643/94121/116068/121601/124491/128989/150368/155382/163590/165324/168620/196527/221035/255919/282679/283796/284361/339122/389668/399687/399979/440270/493829/653073/653720/727910/728498/57679/27035/6683/55300/5798/8943/10565/23471/65055/7251/3998/57662/1785/5788/25978/29887/55151/22931/7443/51016/215/2010/9688/79152/8766/9694/79816/6449/5864/8729/57584/57003/55161/2054/8724/64083/662/11235/57088/6711/26003/22930/23207/149371/8934/25782/10783/79591/400/7852/5552/10133/23363/9217/128637/10142/64753/5819/23345/84313/92154/23208/84327/891/51361/8291/5270/9648/51028/55627/55014/10211/51332/5861/26509/23317/9101/3801/1453/54808/9980/55204/57198/1130/8560/23671/7110/287/2934/51501/55004/50807/22878/375056/55361/123720/9133/55113/222068/116238/8878/6280/23122/92421/256979/23353/9897/19/6609/23423/81565/9382/23306/64400/10972/79188/286046/9451/23023/2804/64801/79102/1263/23592/80124/196996/10458/79643/2580/9798/26276/54732/10345/57698/57048/1201/282991/79633/144717/439/51062/1639/389158/51608
## GO:0042176                                                                                                                                                                                                                                                                                                                                                                                                  207/819/857/868/999/1027/1075/1191/1452/1454/1457/1601/1915/1917/1942/1950/2043/2272/2295/2308/2629/2768/2932/3077/3303/3304/3320/3326/3416/3949/4092/4193/4194/4287/4478/5045/5071/5300/5310/5347/5476/5707/5709/5720/5728/5747/5774/5887/5962/5970/6093/6201/6386/6613/6662/6790/6880/6923/7076/7077/7133/7314/7336/7337/7341/7430/7879/7917/8473/8667/8754/8945/8975/9097/9113/9146/9529/9655/9683/9686/9709/9810/9827/9860/10075/10134/10193/10221/10444/10533/10755/11011/11200/11213/23376/23429/23450/25820/25837/26234/26259/27351/28996/29062/29116/29997/51160/51343/51429/55294/55353/57095/57520/57531/57761/57805/64844/79016/79699/79888/80011/83737/91445/116224/127544/144165/152503/153090/153769/154214/165324/255488/255738/282679/440730/474383/474384/1595/23077/2534/5704/9604/6642/8554/25897/23327/5601/55737/4734/1459/28951/5566/55743/4905/369/27074/3093/4898/4983/9817/7514/25831/51322/25807/27352/9978/5700/81610/140462/51201/6625/4946/6449/2931/51684/64750/8078/9532/8724/3156/7474/4953/4780/991/7128/22954/9870/2185/6125/11059/725/7471/23163/3553/9349/9491/863/348/2670/10197/80762/324/29979/5270/55270/3586/6653/51374/580/9101/160418/5371/85407/1453/6135/51514/7110/6622/10769/1956/29934/210/9781/2697/51582/29761/7079/65018/9992/23400/56893/7805/149628/25976/25898/4085/7415/51339/4088/4130/5245/26263/1642/55872/11236/10869/6599/1263/5708/79643/10425/5886/122809/91304/754/2903/51079/7874/29978/2316/258010/6815/11060/57154/135644/10399/641700/112398
## GO:0009896                                                                                                                                                    208/27161/207/351/405/472/677/678/857/868/957/1027/1075/1191/1452/1454/1457/1601/1612/1950/2308/2309/2629/2773/2932/3064/3091/3146/3162/3303/3304/3320/3416/3479/3565/3569/3667/3949/4092/4193/4287/4478/5027/5045/5049/5071/5209/5291/5347/5465/5563/5581/5587/5595/5728/5747/5770/5962/5987/6093/6613/6662/6790/6794/6885/6923/7133/7248/7291/7336/7341/7430/7538/7832/7879/7917/8408/8517/8570/8671/8754/8975/9567/9655/9686/9698/9709/9810/10018/10075/10134/10140/10193/10221/10247/10444/10533/10558/10658/11040/11331/22849/23019/23112/23367/23376/23411/23435/23530/23677/25820/26137/26234/26259/26353/26986/27244/27327/27329/29110/29116/29997/51099/51100/51160/51343/51429/54915/55294/56829/57520/57531/57690/57721/57761/58476/60592/64115/79016/79443/79699/79837/79888/83667/83737/85363/87178/90678/91445/92140/94103/94241/116224/127544/140775/143686/144165/152503/153090/153769/154214/195827/201163/246175/253943/255488/255738/340152/340719/440275/440730/5976/51085/5286/5704/9604/6642/8554/25897/55187/23327/5601/55737/4734/28951/55743/4905/4898/9817/25831/51322/25807/27352/9978/9517/5700/215/140462/7249/665/4946/6449/2931/9830/64750/10645/8078/221662/9532/7957/7474/5210/22930/4780/9528/57535/991/22926/7128/25782/22954/9870/2185/117854/11059/10133/725/23163/3553/10236/8678/79066/3791/863/348/80762/10346/5562/2926/9475/324/29979/149041/6653/580/3184/160418/85407/1453/201292/51514/6622/10769/5305/9781/2697/4343/9337/6832/65018/9992/26086/7805/149628/25976/25898/151636/7415/51339/26263/55128/1642/11236/3643/81603/1263/664/220441/10425/57104/5886/122809/399664/91304/754/339976/340061/8660/51079/53373/389421/29978/6829/258010/11060/51441/57154/29883/26058/10399/131405/7416/641700/112398/8396
##            Count
## GO:0010498   329
## GO:0016569   314
## GO:0016570   306
## GO:0010256   325
## GO:0042176   268
## GO:0009896   305
set.seed(the_seed)
go_ora_o <- enrichGO(gene         = multimir_results@data$target_entrez,
                   universe      = names(geneList_dge_no_dups),
                OrgDb         = org.Hs.eg.db::org.Hs.eg.db,
                ont           = "all",
                pAdjustMethod = "BH",
                pvalueCutoff  = 1,
                qvalueCutoff  = 1)
head(go_ora_o)
##      ONTOLOGY   ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID
## NA       <NA> <NA>        <NA>      <NA>    <NA>     NA       NA     NA   <NA>
## NA.1     <NA> <NA>        <NA>      <NA>    <NA>     NA       NA     NA   <NA>
## NA.2     <NA> <NA>        <NA>      <NA>    <NA>     NA       NA     NA   <NA>
## NA.3     <NA> <NA>        <NA>      <NA>    <NA>     NA       NA     NA   <NA>
## NA.4     <NA> <NA>        <NA>      <NA>    <NA>     NA       NA     NA   <NA>
## NA.5     <NA> <NA>        <NA>      <NA>    <NA>     NA       NA     NA   <NA>
##      Count
## NA      NA
## NA.1    NA
## NA.2    NA
## NA.3    NA
## NA.4    NA
## NA.5    NA
kegg_ora <- enrichKEGG(gene         = multimir_results@data$target_entrez,
                 organism     = 'hsa',
                 pvalueCutoff = 1)
head(kegg_ora)
##                ID             Description GeneRatio  BgRatio       pvalue
## hsa05205 hsa05205 Proteoglycans in cancer  157/4196 205/8093 1.364483e-13
## hsa05131 hsa05131             Shigellosis  179/4196 247/8093 1.470540e-11
## hsa04150 hsa04150  mTOR signaling pathway  120/4196 155/8093 3.066436e-11
## hsa04520 hsa04520       Adherens junction   63/4196  71/8093 3.188723e-11
## hsa04110 hsa04110              Cell cycle  100/4196 126/8093 1.065623e-10
## hsa04068 hsa04068  FoxO signaling pathway  101/4196 131/8093 1.730831e-09
##              p.adjust       qvalue
## hsa05205 4.516438e-11 2.671513e-11
## hsa05131 2.433744e-09 1.439581e-09
## hsa04150 2.638669e-09 1.560796e-09
## hsa04520 2.638669e-09 1.560796e-09
## hsa04110 7.054426e-09 4.172756e-09
## hsa04068 8.485766e-08 5.019407e-08
##                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             geneID
## hsa05205                                                                                                                                                                  6608/208/10855/60/71/207/286/387/595/815/836/857/858/960/998/1026/1277/1278/1432/1499/2002/2064/2065/2247/2475/2535/2885/3091/3339/3479/3480/3481/3549/3673/3688/3845/4087/4193/4233/4478/4609/4893/5170/5290/5291/5295/5335/5336/5501/5567/5578/5579/5594/5595/5603/5604/5747/5777/5829/5894/5962/6093/6198/6237/6382/6385/6774/7023/7042/7057/7157/7291/7422/7430/7473/7477/7479/7482/7484/7855/8322/8323/8324/8325/8326/8503/10451/10818/22800/27250/29102/51196/51384/5329/355/4659/816/1975/2817/5566/9138/2260/369/3693/2017/4313/6548/3710/4318/7976/7040/5296/1655/2549/81029/1839/7474/2335/6654/10000/5328/3709/7471/54776/3791/2318/3236/9475/1514/967/80326/2317/5879/7099/6194/3685/8826/287/1956/818/5058/3708/89780/7476/7074/8321/673/3678/6383/6199/2066/5781/23365/2316/6714/5500/3690
## hsa05131 208/63916/1399/60/71/81/207/375/387/472/596/598/823/960/989/998/1398/1432/2308/2309/2475/2932/3021/3099/3576/3606/3611/3688/3725/4193/4303/4735/4793/5290/5291/5295/5335/5336/5581/5594/5595/5599/5602/5603/5747/5829/5970/6093/6198/6500/6885/7094/7157/7186/7189/7307/7314/7321/7322/7323/7334/7335/7336/7414/8290/8350/8351/8352/8353/8356/8357/8358/8503/8517/8915/8945/8968/8976/9140/9252/9266/10094/10097/10163/10325/10627/10892/11335/22863/23048/23176/23291/25851/26100/29108/29110/51196/54205/54874/57180/58528/64121/84335/92610/103910/115004/126961/199746/333932/440093/653604/100132074/9265/5601/9564/23118/9474/55062/87/5289/51619/7188/2017/55054/55072/3710/9978/5332/84557/5296/2931/5216/4790/8936/10096/3554/9181/10000/3709/3553/718/826/3661/8678/1729/9475/5879/7099/834/55752/81631/10318/1956/1793/7316/3708/831/10670/3098/257397/8878/3678/113026/10092/114548/10109/382/4615/6199/664/81858/340061/10801/6714/1147/7416/4636/10552/8355
## hsa04150                                                                                                                                                                                                                                                                                                                 208/207/387/523/525/526/528/529/1857/1978/2475/2535/2885/2887/2932/3479/3480/3667/3845/4041/4893/5170/5290/5291/5295/5563/5578/5579/5594/5595/5604/5728/5894/6195/6197/6198/6249/6446/6794/7248/7473/7477/7479/7482/7484/7855/8140/8322/8323/8324/8325/8326/8408/8503/8649/9296/9550/10325/51384/51719/54541/58528/64121/64223/64798/64900/79109/81929/83667/84335/153129/201163/253260/729438/1856/57600/1975/4040/6196/55437/9706/9681/9894/9675/9663/81617/79726/8131/7249/7976/5296/6009/81029/7474/6654/10000/7471/5562/80326/9470/6194/55004/127124/89780/7476/10670/6396/8321/673/54468/6520/3643/6199/220441/389541/1147/96459/652968/90423/92335
## hsa04520                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   60/71/81/387/998/999/1387/1457/1499/2033/2064/2241/3480/4089/4233/4301/5594/5595/5770/5777/5792/5795/5818/5881/6885/6934/7048/7082/7414/8976/10163/10810/51701/83439/9855/2534/1495/1459/87/2260/10580/7046/8936/6615/5787/5880/5819/4008/5879/51176/8826/81607/52/1956/56288/4088/3643/5797/10458/7525/25945/6714/1500
## hsa04110                                                                                                                                                                                                                                                                                                                                                                                                                                                          898/1021/25/472/595/890/894/896/983/990/996/1017/1026/1027/1030/1111/1387/1870/1871/1874/2033/2810/2932/4087/4089/4176/4193/4609/4998/5000/5111/5347/5885/5925/6500/7027/7042/7157/7465/7529/7531/7532/7533/7534/8243/8555/9088/9134/9184/9700/10971/11200/23594/51343/51434/64682/10926/4171/4175/27127/8556/5933/8318/8697/8317/4616/4174/9978/1869/10735/5934/4173/7040/9126/25906/4172/7272/3065/1647/7709/991/1031/25847/1028/8900/1875/891/23595/1019/51529/701/9133/995/993/4085/9232/4088/699/29882/5591
## hsa04068                                                                                                                                                                                                                                                                                                                                                                                                                                    208/207/472/595/604/894/1017/1026/1027/1030/1387/1432/1454/1950/2033/2308/2309/2885/3479/3480/3569/3575/3667/3845/4089/4193/4303/4893/5170/5290/5291/5295/5347/5563/5571/5594/5595/5599/5602/5603/5604/5728/5894/5896/6446/6517/6648/6774/6789/6794/7042/7048/8503/9140/9455/10018/10365/11337/23411/23678/51701/80854/114907/100132074/100533105/5601/369/4616/5106/10110/5934/7040/5296/7046/6654/1647/10000/8743/2538/5565/5562/8471/891/3586/901/23710/92579/10733/10769/1956/9456/9133/673/4088/1901/3643/1263/664/8660/7874/1147
##          Count
## hsa05205   157
## hsa05131   179
## hsa04150   120
## hsa04520    63
## hsa04110   100
## hsa04068   101